RNA id: TU28765



Basic Information


Item Value
RNA id TU28765
length 274
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G22944
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 14065371 ~ 14065644 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tgacgccgctgatgaggtgctcatgtgccgcagctgtgttgtccgcttcctcgctaacaggctgctgactcacggctgcgggcaatgagcaccgaggcgactgtgacatcagcggcagctgtgccctgtctatttaacccctctccctccccgacgGAGGCATCTAACTATAGAGAAGGAGGACTGAGTCCATACCCCCTGTCTGCGCGGAGCTcccagtttgtgtttgtgtttgtgtttgtgttttccccACTTGAGAGCCTGAACtgaataa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU28761 lncRNA upstream 163 14064950 ~ 14065208 (+) True G22940
TU28753 lncRNA upstream 24311 14040792 ~ 14041060 (+) True G22935
TU28750 lncRNA upstream 43054 14022091 ~ 14022317 (+) True G22932
TU28748 lncRNA upstream 119306 13945638 ~ 13946065 (+) True G22930
TU28701 lncRNA upstream 387670 13676957 ~ 13677701 (+) True G22893
TU28789 lncRNA downstream 111091 14176735 ~ 14215056 (+) False G22962
TU28788 lncRNA downstream 144509 14210153 ~ 14215056 (+) True G22962
TU28809 lncRNA downstream 220489 14286133 ~ 14290625 (+) True G22979
TU28943 lncRNA downstream 958582 15024226 ~ 15024688 (+) True G23100
TU28981 lncRNA downstream 1151532 15217176 ~ 15309751 (+) True G23130
AMCG00007327 mRNA upstream 1289 14049393 ~ 14064082 (+) True AMCG00007327
AMCG00007328 mRNA upstream 83518 13975305 ~ 13981853 (+) True AMCG00007328
AMCG00007322 mRNA upstream 418358 13646627 ~ 13647013 (+) True AMCG00007322
AMCG00007321 mRNA upstream 440564 13623144 ~ 13624807 (+) True AMCG00007321
AMCG00007317 mRNA upstream 514250 13541756 ~ 13551121 (+) True AMCG00007317
AMCG00007329 mRNA downstream 92540 14158184 ~ 14185574 (+) True AMCG00007329
AMCG00007332 mRNA downstream 300064 14365708 ~ 14383919 (+) True AMCG00007332
AMCG00007335 mRNA downstream 373682 14439326 ~ 14473693 (+) True AMCG00007335
AMCG00007337 mRNA downstream 413119 14478763 ~ 14479838 (+) False AMCG00007337
AMCG00007336 mRNA downstream 434211 14499855 ~ 14503459 (+) True AMCG00007336
TU28420 other upstream 3452267 10611196 ~ 10613104 (+) True AMCG00007307
TU28037 other upstream 4565643 9436524 ~ 9499728 (+) True G22372
TU27900 other upstream 5354060 8704657 ~ 8711311 (+) True AMCG00007253
TU27825 other upstream 5669129 8367436 ~ 8396242 (+) True AMCG00007243
TU27445 other upstream 6686425 7374323 ~ 7378946 (+) True G21891
TU28829 other downstream 413029 14478673 ~ 14489692 (+) True AMCG00007337
TU28988 other downstream 1220853 15286497 ~ 15287960 (+) False AMCG00007352
TU29675 other downstream 4133124 18198768 ~ 18201960 (+) True AMCG00007417
TU29676 other downstream 4141434 18207078 ~ 18208308 (+) True G23698
TU29705 other downstream 4224464 18290108 ~ 18292338 (+) True G23724

Expression Profile