RNA id: TU36855


Basic Information

Item Value
RNA id TU36855
length 1286
lncRNA type inter_gene
GC content 0.59
exon number 1
gene id G29425
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 47605140 ~ 47606425 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTACATAGATCCGCCAACCGCCATATCCACTAGGAAAATCTCCATTCCATCTGCTTTACACACCTTTAGAGGTCGTGGGTCAAAGCAAACTTTGAAGGCAGTGCCAGACGGGGCACAGAGTGGCACCAGCAACCGGGTGTCGAAGTAGACCCTGATGTCATCAAAGCGCTTCTTCCGCAGGGGGCCCTGAGCCAGGGTCTGCTCTTGGTAACTCTGTAGGAGCTGCTGAATGCCCTCTCGCAGCGGCCGAACAAAGTCTTCACGCAGGAGCCGGAAGTGGGTGTCCAGGTAGAGCTGGATGCTGGGGTAACTGCAAGAGGTGACATTGGGTCGGAGGAAAGGCTTCTGCTCTTGGTGGATCTCCTCGGGGCTGGGGTAGATGGTCATGGTGCGGAAgtccccttctcccggtggggCGTCTTCATCTGGGGTCAGGAATGTGTAGTTGTCAGATCTCAGGGTGCCGTCCCTGGCTTTCTCTTGCAGGTGGGTGGCCAGTTCTTGGATCTTCTCCAGGTTTTTCTCTGTGCGCTCATGAACGTCCACCCCAGACGCTCGTAGGCTGTTGATCGCCGCCTTGAGGAGGGCAACCAGCATGGCAGCCACCTGCACAGAACTGGCCGGGAAGATGCTGACCACATCCGAGAGGAGGCTGACGATGTTGTCCAGGTGTTCAGGGTACTGCGCCCGCCGGGCAGGGATGTGATCTGACATCATGCCAGCTACGTAGTGTGGGAGGATCGTTCGAATGAAGCCTGAGTCCTTCACCGCCCCTGCCAGGTGCTGCACGATCCGGCGGTCACTCCTAGAGCCGATGGCTTTGCTCAGGACCCGGCACAGGAGCTGCACCATGTTGTGGCCCATCTCCGGCTCCTCCAGCAGAGCTCTCAGCCCCGCGCTGGACGACAGAGTGATGGCCATCTCGGATGCCTCCTTGTCACACAGCTCCTCTAACGCCTTGAACCCCAATCTCCGGATCTCGGGTTGATCCTCCTCACCTGCGTTCCTCCCGCCTTGCCCTCTGCCGctgcctcttcctctccctcttccttgCCCTCTGCCCCCGTTCCACTCCCCTCTCTCATTCCTTGCATCGCCCTCCCTGTccactcttcctctccctctcccaccaTCGCCTGCCctgtctcctcttcctctctccccatTCCAATTCAGATTATCTCTGCCCCTCCCTCTATCCCTCCAATCATTCTGCTGGTTCCCCCTGTTTGCCCCTCTTCTCCCCCCCCCGCCTCTTCCTCCCCCTTGGTTGGGTCCCTGGTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36854 lncRNA upstream 2454 47602218 ~ 47602686 (+) True G29424
TU36853 lncRNA upstream 4039 47600820 ~ 47601101 (+) True G29423
TU36852 lncRNA upstream 5672 47599234 ~ 47599468 (+) True G29422
TU36849 lncRNA upstream 15326 47589513 ~ 47589814 (+) True G29419
TU36847 lncRNA upstream 26499 47577676 ~ 47578641 (+) True G29417
TU36861 lncRNA downstream 7076 47613501 ~ 47615931 (+) True G29431
TU36952 lncRNA downstream 330541 47936966 ~ 47941754 (+) True AMCG00008249
TU36951 lncRNA downstream 330965 47937390 ~ 47941754 (+) False AMCG00008249
TU37001 lncRNA downstream 530044 48136469 ~ 48136724 (+) True G29546
TU37075 lncRNA downstream 808578 48415003 ~ 48419063 (+) True G29612
AMCG00008226 mRNA upstream 1074382 46530450 ~ 46530758 (+) True AMCG00008226
AMCG00008221 mRNA upstream 1474123 46124130 ~ 46131017 (+) True AMCG00008221
AMCG00008220 mRNA upstream 1514147 46077307 ~ 46090993 (+) True AMCG00008220
AMCG00008219 mRNA upstream 1536322 46039948 ~ 46068818 (+) True AMCG00008219
AMCG00008218 mRNA upstream 1693533 45867343 ~ 45911607 (+) True AMCG00008218
AMCG00008232 mRNA downstream 16527 47622952 ~ 47633651 (+) False AMCG00008232
AMCG00008238 mRNA downstream 107908 47714333 ~ 47716582 (+) True AMCG00008238
AMCG00008239 mRNA downstream 194673 47801098 ~ 47813090 (+) True AMCG00008239
AMCG00008242 mRNA downstream 283557 47889982 ~ 47892071 (+) True AMCG00008242
AMCG00008243 mRNA downstream 289493 47895918 ~ 47908312 (+) True AMCG00008243
TU36851 other upstream 9454 47595104 ~ 47595686 (+) True G29421
TU36848 other upstream 18905 47580213 ~ 47586235 (+) True G29418
TU36777 other upstream 1336813 46267891 ~ 46268327 (+) True G29353
TU36524 other upstream 2164076 45440513 ~ 45441064 (+) True G29183
TU36476 other upstream 2261226 45340596 ~ 45343914 (+) False AMCG00008194
TU36868 other downstream 20871 47627296 ~ 47671421 (+) False AMCG00008232
TU36872 other downstream 25765 47632190 ~ 47637376 (+) True AMCG00008232
TU36882 other downstream 58092 47664517 ~ 47715537 (+) False AMCG00008238
TU36905 other downstream 257144 47863569 ~ 47890683 (+) False AMCG00008242
TU36904 other downstream 282602 47889027 ~ 47890683 (+) False AMCG00008242

Expression Profile