RNA id: TU37395


Basic Information

Item Value
RNA id TU37395
length 1294
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G29883
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 49838005 ~ 49839324 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTCTCTTAAAATTCTCTCTTTATTCTCTCCAAAAatcagaaatacaaaacaagaccaagttgttcaaaacatttattgtcACAAAGTTAATTTTCTAAATATCTGAGGCATAAACATTTCATAAATCAGGGCCCATTTCAGGTCCAAGGGTAATGTCTCCTGCAGCCATCTACCTCATTTACTCATCCTGCTAGCCTACCATGGACCTCTTCCTTCCCCTTAGTCTCACTTCGTTCAGCTTTTTAATGACAGCTGCTGATTTCTTTGAGGAGACAGAGTAGCTTTTCAGTAGCCTCTCAAAGACGTCCTCTGTGTTCGGGTGGGTGCTCAAAAATGCCTTCTCCAAAACATACAGGTCTACACCCTTGTCCTCGGGCAAAGCCGAGATACAGCTCAATCCAAAGTCAATCAGCACCAGGTCCACTTTccctccttcactctctctcctcagaaGCATATTGGAGGTTGTCAGGTCTCCATGAATGACGTCCTCATCATGCATCTTTGCCAAAATCTGCCCCATTTGCTCGGCTAACGGGTGGAGATTCTCAGAGTCCTTTTCGGAGGCCTGCATTGAGGTGATATGGTCTCGAACTGTGGCCGACTTCACAATTTCTTCAAGAATGATGCAATGGGACGTGTAgtcaacaaaataaactacaggaGCCGATATACCTGGACAAGAATCAAAAGTTTACTTTAATCACAACATATATTAATGTAGCACCACAGAGAGACagcatttttgtatgtatgtattttgtatgcacttatgtaattctGAACTTCTAATTTGTACTATGCTTTGTAATGTGTAATTCTAGAtagtattgcatttttataatgctCTAATGTTAGGACCTTTTAAGACCTCAAACATGTTTAATCAATTGTTGTTCtttaaagagaaattaaatgtaatctaaaaGATGTATGATACCACACTTTCTCACTCAAATCAAAACAGTGGCACTCCACTGAACCTAAGCAAGTCTGTGCCTGGCCAGTACTTGGATGGGAGACCTCCTGGGAAAAACTAAGGTTGTTGCTGGAAGAGGTGTTGGTGAGACCAGGTCTTGGATCCCAATACCCTAGTACAGGGATGGGGACACTGCTGTGAATAGGAAACTGAGTTCCTGATTCTCTTTGGTCATTAAAAATCTCAGGGCATTTCTTGAAAAGAGTAGGGGTGCATCCTGCACAAATTTCCAACGTTGGCCCTTATCGAttaaggaaatgttttatttatttatatatatatatatatatatatattacaatacttaatataat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37386 lncRNA upstream 40022 49796444 ~ 49797983 (+) True G29877
TU37362 lncRNA upstream 293274 49544362 ~ 49544731 (+) True G29853
TU37320 lncRNA upstream 458631 49368645 ~ 49379374 (+) False G29823
TU37321 lncRNA upstream 458631 49368645 ~ 49379374 (+) True G29823
TU37309 lncRNA upstream 489983 49344038 ~ 49348022 (+) True G29813
TU37396 lncRNA downstream 188 49839512 ~ 49857994 (+) True AMCG00008279
TU37507 lncRNA downstream 214389 50053713 ~ 50053971 (+) True G29973
TU37513 lncRNA downstream 255714 50095038 ~ 50095273 (+) True G29979
TU37521 lncRNA downstream 286366 50125690 ~ 50126131 (+) True G29986
TU37525 lncRNA downstream 308325 50147649 ~ 50148723 (+) True G29990
AMCG00008281 mRNA upstream 241212 49587067 ~ 49596793 (+) True AMCG00008281
AMCG00008280 mRNA upstream 277925 49549906 ~ 49560080 (+) True AMCG00008280
AMCG00008272 mRNA upstream 366390 49469289 ~ 49471615 (+) True AMCG00008272
AMCG00008271 mRNA upstream 430932 49404931 ~ 49407073 (+) False AMCG00008271
AMCG00008270 mRNA upstream 545950 49289241 ~ 49292055 (+) False AMCG00008270
AMCG00008279 mRNA downstream 2793 49842117 ~ 49858576 (+) False AMCG00008279
AMCG00008283 mRNA downstream 40655 49879979 ~ 49881352 (+) True AMCG00008283
AMCG00008288 mRNA downstream 483389 50322713 ~ 50356404 (+) True AMCG00008288
AMCG00008291 mRNA downstream 519663 50358987 ~ 50359865 (+) True AMCG00008291
AMCG00008292 mRNA downstream 527120 50366444 ~ 50403958 (+) True AMCG00008292
TU37330 other upstream 419259 49404856 ~ 49418746 (+) True AMCG00008271
TU37226 other upstream 666988 49163816 ~ 49171017 (+) True AMCG00008263
TU36912 other upstream 1921748 47913868 ~ 47916257 (+) False AMCG00008241
TU36905 other upstream 1947322 47863569 ~ 47890683 (+) False AMCG00008242
TU37559 other downstream 512203 50351527 ~ 50352794 (+) False AMCG00008288
TU37728 other downstream 1587257 51426581 ~ 51428055 (+) True G30166
TU37800 other downstream 2261438 52100762 ~ 52101524 (+) True G30232
TU37873 other downstream 2539005 52378329 ~ 52378776 (+) True G30299
TU37877 other downstream 2542017 52381341 ~ 52382418 (+) True G30300

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000032_02177435_02181886.mRNA False 3945 mRNA 0.46 5 CI01000032 2177222 ~ 2183665 (-)