RNA id: TU37656


Basic Information

Item Value
RNA id TU37656
length 200
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G30104
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 50798120 ~ 50798319 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTTTCATGTTGTTCTTGGGCTCCAGAGGGATTTCCAGGATCTTGGTGCTGCCGACGACCTTCTCGTAGCTGGTGGTGGTGACGGTTTTGCCTGTGATGCGGTGGACCTGGTAGAAGGCATGCGGTTTCAGGATCCTCTCGTCAGCCGTCCCGATGAAAATCTGCAGCCCCAGTGGCTCCTTCCCCCTGTAGCCATGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37654 lncRNA upstream 5830 50792075 ~ 50792290 (+) True G30102
TU37650 lncRNA upstream 45813 50750380 ~ 50752307 (+) True G30099
TU37632 lncRNA upstream 242531 50555384 ~ 50555589 (+) True G30083
TU37627 lncRNA upstream 262133 50535774 ~ 50535987 (+) True G30078
TU37622 lncRNA upstream 267373 50528533 ~ 50530747 (+) True G30073
TU37686 lncRNA downstream 208058 51006377 ~ 51010069 (+) True G30132
TU37694 lncRNA downstream 269821 51068140 ~ 51068707 (+) True G30139
TU37703 lncRNA downstream 379860 51178179 ~ 51178383 (+) True G30146
TU37720 lncRNA downstream 581249 51379568 ~ 51379793 (+) True G30158
TU37726 lncRNA downstream 622328 51420647 ~ 51423538 (+) True G30164
AMCG00008296 mRNA upstream 215937 50562754 ~ 50582183 (+) True AMCG00008296
AMCG00008294 mRNA upstream 338066 50451310 ~ 50460054 (+) True AMCG00008294
AMCG00008292 mRNA upstream 394162 50366444 ~ 50403958 (+) True AMCG00008292
AMCG00008291 mRNA upstream 438255 50358987 ~ 50359865 (+) True AMCG00008291
AMCG00008288 mRNA upstream 441716 50322713 ~ 50356404 (+) True AMCG00008288
AMCG00008304 mRNA downstream 534984 51333303 ~ 51336685 (+) True AMCG00008304
AMCG00008309 mRNA downstream 737151 51535470 ~ 51542896 (+) True AMCG00008309
AMCG00008308 mRNA downstream 754287 51552606 ~ 51560087 (+) True AMCG00008308
AMCG00008310 mRNA downstream 854045 51652364 ~ 51657000 (+) True AMCG00008310
AMCG00008316 mRNA downstream 1468114 52266433 ~ 52311801 (+) True AMCG00008316
TU37559 other upstream 445326 50351527 ~ 50352794 (+) False AMCG00008288
TU37330 other upstream 1379374 49404856 ~ 49418746 (+) True AMCG00008271
TU37226 other upstream 1627103 49163816 ~ 49171017 (+) True AMCG00008263
TU36912 other upstream 2881863 47913868 ~ 47916257 (+) False AMCG00008241
TU36904 other upstream 2907437 47889027 ~ 47890683 (+) False AMCG00008242
TU37728 other downstream 628262 51426581 ~ 51428055 (+) True G30166
TU37800 other downstream 1302443 52100762 ~ 52101524 (+) True G30232
TU37873 other downstream 1580010 52378329 ~ 52378776 (+) True G30299
TU37877 other downstream 1583022 52381341 ~ 52382418 (+) True G30300

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_00716122_00741331.mRNA True 3404 mRNA 0.53 11 CI01000001 716103 ~ 741620 (-)