RNA id: TU37686


Basic Information

Item Value
RNA id TU37686
length 3693
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G30132
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 51006377 ~ 51010069 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTCAGTGGTTCATATGAATGTGTAACGAACTTTATTTGCTTTCCTTAAAAGGATGTTTACATTATACAtccagatttatatataaaacaagaactgcattacattattatgattttttttacagtaccCCCCTTTAGCTCATACAACCTGGAATGGttcttttcttcattaaaaagaaaaaagaaaaaagagggCATTTTTATTTAGCATGAAAACAGCTTTGAGTAGCTCACATTTGAaaggtttaagttaaatctTTTGACAGATAGCTGATGTATGCATATGCTATTCACCATTGTAGATCCTTGCAGAAGGTCAATGAAttgttcatacattttttcCTACCCGattacacacacaacataaaatTCTGTCTCATTCCAGCTTGCTTTATGGTGTCTATGACAGCTGAAGTCTGTGTAGACTGTGTAGCCATTTTGTCTGGCCTCTGGAACATCATtaatctacttttttttttttttgctgagatTTATAGTCGATATTATAGAGTTGGTAAAAGCTGACAGGCTGCGGGTGAGCTTGGAAAGCTATTACCTCTGTAAGGAAAATCAATGGTCAATGGTTCCTAAGAGAGCACTTCCCAAGTGGAGTCATCACCTTACAACAATTAATGACGGATGGACACAGTGAGGATACATGCCCACAGACGCACGAACAATGCAAAGGtagaaaagaacaacaaaagtcaaacaaaatgtcaatttgaaaaacaactgTTTATGGAGATAGGGAAAAGGTACATTTGGAAAGCAAATCAAACCAAACTAGGGAATTGATTTATGATGGTGATTTGACATGCAATTTGGCGACTGtctattttattacatattttcacaaaacactCCTCGTGTGGTGACACCCAACTGGATCATTCTGAAGAAGACAGAATAAAAGAAATACCCTTTTTGTGTTGTGAAGACCAAGCCTTATAAAAAAGTCATCTGACACAGATACCaaacataaatatgtacatatttctaAGATAATACAAAACCAAGGTTGACATTAAGTGCCCAGTTGCTTATCTCTGCATGCCACCTATTAACAGGAAGTTTTCAAATACTCACATCTGAAAAATGCCACAACCATTATCTGTGAGTAATTTTTCTACAATTTTATATGATAGAAAAAGCATATCTTTGTttacaacatgttttaaagaCAGCTCAGCACTGATCATAGTAAGCTGATAGCACACTCGtataagaacaaaaacattcaaggtaaaagaaaaaattaGGTAGGCcacaaaatcacttttttttttttggctttctGTCACTATCTTATCATCTTTCTTGAGTTGTTACCGTTAAACTGTGTCCAAtgtgtaacattaaaaatacataaaagtggTAAAATAAGTGTGTGCTTATGTAGTTAATATAGAGATGATGAAACAGTTGATGAGAACAGATTTCCAAATGCTGATTGTCATTAATAATTTAGGGACAGTTTTTACCTGGTTAAAGCAAACCCTgccaaattaatttcagatactTATTGAGGAAAGCGGGAGCCCATTTCTATCACATTCTGTTAGACTCCATTTGTATATCCTGCTAACCTCCTGTTTCTCAGACTACTGTACTACCATGGAGAACTGATCATGACTCTCTGTATAAGGTACTAGTTATCattctgctcttgctttttCTGTGCTGTGCACTTCATACTTTGTattcatacaaatacaatgtaatattcATATTGTAATCTACTGTACCCTTATACAAACTTGTAAATCATCTTTGTTAAAGCTATGTGCTCAATGAATACAATAACTAAAAATCAGTTAAGAAgacaaagaaagcaaaagacTAGACTTCTGATGACGTTTGCTTTTGAAGGTGcgagaaaaaaaaggttttgtgcAATACTGACGATCTCTTTCTGCAAACCATGAAGCCAACTGCATCCCCACGCTAATTGTATCAGGAGCAGTTTATCTTCCTAAGACTGGCGGTAACAGACTGGCCAGCCCTGGGGCCCCACAAACACAACTGCTTTCCACAGTCTTATCTTTCCTGTTGGTCTCCCGCCAACACACTCTCAAAAGGTGTCATGTGCTCTTGTGAGCAATCACACAGCACAATAAACTAGAAACCCTTTATGTTCTTGTTGTTGCATTCTGCAAGTCAGGAAATCCCGTTTATTCATACTAACAAAACCCATGACAGTTATGATATTGTGGCTAAGCTGGTCTGCAATTTCAATACCAATCTGAGGAGTTGCAGGTGTAGAATGGGTATGATTGGCAGGAAATGTACTGCTAGCTTGTCCATCCCCTTTAGCTAAAAAAAATGAAGCCTACTCTTTCAAAATTCTGTTGACTCAATGCCAAAAGAGTGCAAAATATATCAGGAGCTCTCTGGCCTCCTCTAGTGGTCTAATGATAAAGTACACTATTTTCACGATATTAGCTGTTTATTGGACAGCTAGTGCCATTTAAAATCTAGTGCcgttttctcaaaataaaatgatatcaTGGCAAAGATAACAACAAAATAGCATTTTAAAGCAACGGCCCAAATCTAACAGTATTAGCAGATTTTGAAGAGCGGCTCCTTTCCAAATGTGTGCCTTTAACgtgttgaattattattattattttttattattattattattgcagcaCTCATAAGGTACTTATGCATCTCAGCTGGGTTCAAATGTAACGATTACAGCGGAAGAGTGGAAAAACGAAatgtgacaaaaacattttccgCTAGtaagggaaacaataaaaatcgGAAATAATCTAACGTTTTTGTCACGGCAATGGTTATGcaagaggggaaaataaatggtaGAGAATGCAAAATTACACGAGCCTCGGTCTGCCCGCAAATATTAGCCGCACCTGAGGTAACAGCGacagatataaataaacacatatatatgtcaTGGTTGAAGAGGAAGATAGAAATCAGCCTTAACAACACCTTTCTTCctacacaaacagaaaaatggcatatcagcttttgttgtttttctgcctgTTATCGTACTCATaccacaaaatgtatacatatgtatctATAATTTGGTATATACCTTTTAATTCTGAAGGAGCTAAGCAACTGCCGTATTACTTTCAGGACTTTTGACGAGTTTCAGAGGGAGAAGGAATCAATGCGgattaaataaagcacattttaaaagggaaactTTTATTctatgccccccaccccccacctcttcTCCAGGAGAATTGCAGGCTCCATTTATTAAGTTTATGGAAGACACATCACACAATTACATTGAAAACAGTTGCTCTACAGTTTTCATAGGCGGTACAACAGCACTTCTGCAGTTAATAATGTAAATCTGTTACCAGAACTGTCCATTACAAGGTGGGGAAAATAaagattgaaaagaaaaaaaaaactaataataaaaaaatgtacaatgtgGTGTTTCAATGGCCTTGTTCCAGCTAAAAATAAGTAACTATGTATAATGAATCTATAGAAGTTGGAGGAAATATGGTTGGTTAAACCTTACTAGCTACCTATCTTGGATTACCTACCTTAGCTTGTCCTGCTTGGTGTAAACTGCAGAAAAGACTGTTGATTGAACAAGGAAGCACACTACACCAGAAATAATTAAGATTCTTCTCCTCTCTCAGCGCCTCTACTTTCCTAACCTGTCACGGCACCCGGGGCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37656 lncRNA upstream 208058 50798120 ~ 50798319 (+) True G30104
TU37654 lncRNA upstream 214087 50792075 ~ 50792290 (+) True G30102
TU37650 lncRNA upstream 254070 50750380 ~ 50752307 (+) True G30099
TU37632 lncRNA upstream 450788 50555384 ~ 50555589 (+) True G30083
TU37627 lncRNA upstream 470390 50535774 ~ 50535987 (+) True G30078
TU37694 lncRNA downstream 58071 51068140 ~ 51068707 (+) True G30139
TU37703 lncRNA downstream 168110 51178179 ~ 51178383 (+) True G30146
TU37720 lncRNA downstream 369499 51379568 ~ 51379793 (+) True G30158
TU37726 lncRNA downstream 410578 51420647 ~ 51423538 (+) True G30164
TU37727 lncRNA downstream 414594 51424663 ~ 51424950 (+) True G30165
AMCG00008296 mRNA upstream 424194 50562754 ~ 50582183 (+) True AMCG00008296
AMCG00008294 mRNA upstream 546323 50451310 ~ 50460054 (+) True AMCG00008294
AMCG00008292 mRNA upstream 602419 50366444 ~ 50403958 (+) True AMCG00008292
AMCG00008291 mRNA upstream 646512 50358987 ~ 50359865 (+) True AMCG00008291
AMCG00008288 mRNA upstream 649973 50322713 ~ 50356404 (+) True AMCG00008288
AMCG00008304 mRNA downstream 323234 51333303 ~ 51336685 (+) True AMCG00008304
AMCG00008309 mRNA downstream 525401 51535470 ~ 51542896 (+) True AMCG00008309
AMCG00008308 mRNA downstream 542537 51552606 ~ 51560087 (+) True AMCG00008308
AMCG00008310 mRNA downstream 642295 51652364 ~ 51657000 (+) True AMCG00008310
AMCG00008316 mRNA downstream 1256364 52266433 ~ 52311801 (+) True AMCG00008316
TU37559 other upstream 653583 50351527 ~ 50352794 (+) False AMCG00008288
TU37330 other upstream 1587631 49404856 ~ 49418746 (+) True AMCG00008271
TU37226 other upstream 1835360 49163816 ~ 49171017 (+) True AMCG00008263
TU36912 other upstream 3090120 47913868 ~ 47916257 (+) False AMCG00008241
TU36904 other upstream 3115694 47889027 ~ 47890683 (+) False AMCG00008242
TU37728 other downstream 416512 51426581 ~ 51428055 (+) True G30166
TU37800 other downstream 1090693 52100762 ~ 52101524 (+) True G30232
TU37873 other downstream 1368260 52378329 ~ 52378776 (+) True G30299
TU37877 other downstream 1371272 52381341 ~ 52382418 (+) True G30300

Expression Profile