RNA id: TU71670



Basic Information


Item Value
RNA id TU71670
length 1008
RNA type TUCP
GC content 0.43
exon number 2
gene id AMCG00009480
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 39434900 ~ 39437017 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCCCACTCCGCCTGACGTCAGACACCTTGTTTAAAAAGCAGGTCTGGCGATCTCCTCCAGCAGAAGAAACGGTTTTTTACAGCAGCGACAGCTACCCGACAGAGTTTTTTCAACAGTTTGCTGCTTCCCATCTCGTTTGAGAAGATGCTCTCCACTCGGCTCCAGTGCGCACTGGCTCTCCTCTCACTGGCCTTGGCCGTCAGCAGCGTTTCAGCCGCACCATCAGACCTGAAACTGCGGCAACTTCTCCAGAGGTCACTGGCTGCGTCCGCAGGGAAACAGGAGCTTGCAAGATACACCCTTGCAGAACTGTTGTCCGAGCTCGCACAATCAGAGAACGAGGTGCTAGAATCGGACGATTTATCCCGGGGGACGGACCAGGATGAAGTAAGACTGGAACTGGAGCGGTCTGCTAATCCAGCATTGGCTCCCAGAGAACGCAAAGCTGGCTGCAAGAATTTCTTCTGGAAGACTTTCACATCATGCTAACTGTGATCCCGACCATCTCTGACccccaaatgtatttttcaacattactttttctcctctctcccctctatCCCTCACTGACCAACACCTGCTGACCACCCCTCTCGTATGAGCTActgactgtaaataaaatactatatcAAATGTTATTATGGTGACTTCAAAtaagaatattaatttaatttaaattataggacaacaaaaaaactttagTTTTATGAATGTATGATATCTGCTTCAAATTGTGGTTTATGTATAGGTCTTTATGATAGGCATTATCCTATACTGGCAGGTAcactatttttaattgtttgtttcaataaaatatatgtttcagACTCCAATGTGTTGATGGCTCCTTGCTTGGAAATCTTCAGActtacattcatattatttttaagttcatGTTTTCTTAGCTGATGTGGgagatacaaaataatgcatcCATTTCACTCATATACACTTAAGGTATACATATAAATGCCTCCTTTACTTAATTTCAATAGGCAAAGGAGAAAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU71627 lncRNA upstream 128126 39306488 ~ 39306774 (+) True G57287
TU71626 lncRNA upstream 128670 39303337 ~ 39306230 (+) True G57286
TU71480 lncRNA upstream 599955 38757380 ~ 38834945 (+) True G57175
TU71465 lncRNA upstream 801549 38633097 ~ 38633351 (+) True G57164
TU71462 lncRNA upstream 806765 38627919 ~ 38628135 (+) True G57161
TU71673 lncRNA downstream 22403 39459398 ~ 39459676 (+) True G57329
TU71734 lncRNA downstream 369588 39806583 ~ 39806928 (+) True G57378
TU71769 lncRNA downstream 437886 39874881 ~ 39875170 (+) True G57401
TU71800 lncRNA downstream 504227 39941222 ~ 39943036 (+) True G57428
TU71839 lncRNA downstream 593551 40030546 ~ 40033333 (+) True G57457
AMCG00009481 mRNA upstream 19304 39409492 ~ 39415596 (+) True AMCG00009481
AMCG00009482 mRNA upstream 29727 39404329 ~ 39405173 (+) True AMCG00009482
AMCG00009483 mRNA upstream 33712 39393569 ~ 39401188 (+) True AMCG00009483
AMCG00009484 mRNA upstream 41335 39378249 ~ 39393565 (+) True AMCG00009484
AMCG00009479 mRNA upstream 132115 39277091 ~ 39302785 (+) True AMCG00009479
AMCG00009489 mRNA downstream 46166 39483161 ~ 39503369 (+) True AMCG00009489
AMCG00009490 mRNA downstream 68939 39505934 ~ 39508504 (+) True AMCG00009490
AMCG00009488 mRNA downstream 123732 39560727 ~ 39566286 (+) True AMCG00009488
AMCG00009496 mRNA downstream 370429 39807424 ~ 39814778 (+) True AMCG00009496
AMCG00009499 mRNA downstream 390311 39827306 ~ 39837637 (+) True AMCG00009499
TU71381 other upstream 977308 38442255 ~ 38457592 (+) True G57105
TU71113 other upstream 1818617 37610343 ~ 37616283 (+) False AMCG00009428
TU70945 other upstream 2067229 37360101 ~ 37367671 (+) True AMCG00009405
TU70668 other upstream 4045573 35388914 ~ 35389327 (+) True G56536
TU70453 other upstream 5403455 34000796 ~ 34031445 (+) True G56368
TU71802 other downstream 511011 39948006 ~ 39949200 (+) True G57430
TU71881 other downstream 665388 40102383 ~ 40104948 (+) False AMCG00009516
TU72035 other downstream 1553807 40990802 ~ 40994659 (+) True G57604
TU72303 other downstream 2599023 42036018 ~ 42078241 (+) True G57830
TU72919 other downstream 4495957 43932952 ~ 43935762 (+) True G58324

Expression Profile