RNA id: TU71881


Basic Information

Item Value
RNA id TU71881
length 1520
RNA type TUCP
GC content 0.44
exon number 2
gene id AMCG00009516
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 40086474 ~ 40105052 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcattttggctctgtacgccaccacaatggactggaaaggaaacaagatgtgctttcaGTGTagatctttaatttgagggtaggtacattcaaattgggtgtacagtataggaattacacccattaagattttttttttttcacgtgCACCCAGGGCGTCATGGGAATATTAGTCTGTCACAGCACTCGGTGAAACCCATTTCAGGTTACTGTGCCAACTGTAGCTGTGTTGCCCTTTTGCCAGACTCTCCGCAGGTGCAGTGTATCCTGTCATACATGGCCCAGGAGCATGATGAGTTATCGGTGGAGATGGCCGACATCATCAACGTCCTGGAGAAAACAGAAGATGGCTGGATGCTGGGCGAACGGCTGCACGATAGTGAGATGGGCTGGTTCCCCAGCAGGGTGGTGGAGGAGATCCAGAACCAGGAGCTGCGCGCACAGAACCTCAGGGAGTGCCAGAGGATCCAGCAAGCCCAAGGCAATGGGGCACGGACCGTGGGAACCAAAGGCAGACGGCTCAGGAGCAGCCACCAGTGACCTGCCTAACCCCAGAGACACTTGCAAAGCCCCTCCACCCGCCCCAGTGGCAGATGCCCCTTCCCACAggcaaaaaatctaaataaatgaagaGATCAACTATCACCAAATCACCTGCGTTCATTGGTTTTCCGTTGACCAACGTCATTGGGTTCCTCACAGCACTGGGTCATTGAACAGTTTTCCTTGTAAAAAGCGAGATGGAATATTTCAAAACAACCGTGTACTCTTGGATAATCGTCACACTTGGCCAGCTTTTCTCGAGCTAAAAAAGGCTTGAGGGGCAGAGAAGGCTGCGAGATTGGGGGGCGCTTTCCATGAAGTGGAGTGAAGTCAAGGTACCTGCAAGCTTTCCACCAAACCCTCACTCCCTGCCTGGATGGCCTGTCTGCCACAGCTCCTTTGGAGATGCTAATCCACTGTCTGGACAGAACGACAACAAACGAACCCAaccaggaaaaagaaaatactgataaatgaatgaatttggTTTATTTCTAGTGAGTggcatgaaaacaaaccaagggAGAAAaatcctttttgtgtgtgtatgttttattcaaacttaaaaagaaaaaaaatctttgtatATCAATGTAAAGtatattattgttaaaatgGCTCAGGAGTGAAgaacacactcaaacacagaaGCAAATTCACACACAAACCTGCAGGAGTTATGAAGTAttacaatataacaaaatagaaaagccacacaatacacacagcaACCCAGTATAAAACGGTGTAAAATCAGCCTGACCTTCCCATGTGTTCAACTCCGGAGCAGGAGTGATCGAGTCACAGCAGCTGTATATAATGTGTTGTATACTAAGGTGTTAAAGGTGttgtaaaaaaagaatgaacatAATATTGCTTTTGTGAATAACAGAACCCTCTTCTGCAAGGAATTAAGCCTCTAGTTCTCcctagatttgtatttttaaaagtaatttattattgaaaataataaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71839 lncRNA upstream 69050 40030546 ~ 40033333 (+) True G57457
TU71800 lncRNA upstream 159347 39941222 ~ 39943036 (+) True G57428
TU71769 lncRNA upstream 227213 39874881 ~ 39875170 (+) True G57401
TU71734 lncRNA upstream 295455 39806583 ~ 39806928 (+) True G57378
TU71673 lncRNA upstream 642707 39459398 ~ 39459676 (+) True G57329
TU71932 lncRNA downstream 54461 40159409 ~ 40159626 (+) True G57523
TU71954 lncRNA downstream 234434 40339382 ~ 40343381 (+) True G57544
TU72028 lncRNA downstream 724124 40829072 ~ 40829677 (+) True G57597
TU72030 lncRNA downstream 828019 40932967 ~ 40933210 (+) True G57599
TU72136 lncRNA downstream 1395016 41499964 ~ 41500218 (+) True G57690
AMCG00009509 mRNA upstream 30096 40071239 ~ 40072287 (+) True AMCG00009509
AMCG00009512 mRNA upstream 72923 40028792 ~ 40029460 (+) True AMCG00009512
AMCG00009510 mRNA upstream 76944 40022081 ~ 40025439 (+) True AMCG00009510
AMCG00009503 mRNA upstream 120336 39967297 ~ 39982047 (+) True AMCG00009503
AMCG00009505 mRNA upstream 164102 39930146 ~ 39938281 (+) True AMCG00009505
AMCG00009515 mRNA downstream 35521 40140469 ~ 40142280 (+) True AMCG00009515
AMCG00009514 mRNA downstream 68018 40172966 ~ 40179050 (+) True AMCG00009514
AMCG00009525 mRNA downstream 84193 40189141 ~ 40203113 (+) True AMCG00009525
AMCG00009524 mRNA downstream 107700 40212648 ~ 40220369 (+) True AMCG00009524
AMCG00009530 mRNA downstream 307265 40412213 ~ 40420872 (+) True AMCG00009530
TU71802 other upstream 153183 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 665388 39434900 ~ 39436995 (+) True AMCG00009480
TU71381 other upstream 1644791 38442255 ~ 38457592 (+) True G57105
TU71113 other upstream 2486100 37610343 ~ 37616283 (+) False AMCG00009428
TU70945 other upstream 2734712 37360101 ~ 37367671 (+) True AMCG00009405
TU72035 other downstream 885854 40990802 ~ 40994659 (+) True G57604
TU72303 other downstream 1931070 42036018 ~ 42078241 (+) True G57830
TU72919 other downstream 3828004 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 4281549 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 4462417 44567365 ~ 44570531 (+) True AMCG00009694

Expression Profile