RNA id: AMCG00009628


Basic Information

Item Value
RNA id AMCG00009628
length 3779
RNA type mRNA
GC content 0.59
exon number 17
gene id AMCG00009628
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42914780 ~ 42927057 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCATCCATCTCCTGCCGTCTCCTTACCTGGAGCCCCAGTGCAGCCCGCCATTGTCCCCGGCCGCTGGCTGAGTTGTACTGCACTGCCCTCTTGTGGCGCAGCTGAGGAATTGCAGCGCCATGGCTTAGCATTAGCATCAGCGCCTCTGGTGTCGCTGAAAACCACGCAGTGTAGCGAGATCACGGAGCGCCGGGCGGAGCTGTACCTGGCTCAGGTGTCGCTGGTGACGTCATGGCCGAGCAGAGGGCTGCGTGTGAGAGACGCACGACTTTCAGTCGGCCCACATGCAGGAGTGAAGTTGCTGTGGGATGTCGTCCCTGTCGGGAGGCTCAGTGCGGCCGGAGCTCATGGCGAGGGCGATGTCTTCACAGCTGCTCTGACTGGGAGAGAAGTTTGCTGCAGTGTCTGTAACTGGGCACTTGCAGGGGACAGCGGGGGTCCCGTCCCCCTCCGCTGGCCTGTGCCGTCCCACGCTCACCCCCGTCTTGTCCTCCGCTGTCCCAGGATGCAGCAGGAGCTGTGGCTGCAGGCGAAACTGCAGGTCCTCGCCTCCCTGAAGCCGATCCGCGCCATGAGAGCCGCTTCCACCGACAGGGCCAACTCCGCCAGCCCCGAGGATGGCACTGTCCGAGCTCAGGAACGAAAGGGTGGTGGTGACTCTGCACCCGTCGGCACCGACGCCCCGATCTCACCTTCCAAGCCGGCCAATCCCGTCAAGAGCTCCAGGACCCACCAGGAACTGCacaaggagctgctgctggcACACAGAAAGGGTCTGGGCGTGAGCAGTAAGCCGGAGCTGCAGGTGGTCTTGGAGAAGCGCCGTCGAGAGCAGACCCAGAGAGAGGAGGGCGAACTGGGCCGGAGTCCCCTGGAGGCGGAGCTGTTCAAGAGGCAGCAGAGGCAGCAGGAGATGGAGCGCCAGCAGGAGAAGGGTCTGGAGGGGAGCCAGCCCCCGGAGTTTGTGAAAGTGAGGCAGAATCTGAGGAAGACCCATCCCATCACGCCTTGCACCGGCTCCTCATTTGCGCAGAAGTCGCGTCTGCTTGCACAGGAGGCGCGGCTGTCCCGTCTGCGCAGATACTCTTTCATCCCCCCGCCCCTCGCGCGGGGCAGCGGCCTGGCCTCGGCACGTGACGGGGGCGGGTCACATGACCGGCGGGGTCACATGACCGCAGCGTCTCTCGTCACGATGACTCTAAAAGGCGCCATGGCTGCAGAGCGGCTGCAGACGTTCCTTGAGAAGATCCGCGCTGAGCTGGACCAGGTGGTGGAGTTCTGGCTGAAACACTCCCACGACCGCCAACACGGGGGCTTTTTCACCTgcctggggagggaggggcagGTCTATGACGAGCTGAAGTACGTGTGGCTGCAAGGGAGACAGGTGTGGATGTACTGTCGCCTGTACCGGACCGTGGAGCGGTTTCGCCGGCCTGAGATCCTGGAAGCCGCCGTGGCAGgAGGGGAGTTCTTACGCTCCCATGCCTGGGCGCCCCCCATGGACGGCCGGCAGAAGTGCGCCTTCTGCCTGACGCGGGACGGCCGGGCGGTGAAGGTGCAGAGGACCATCTTCAGCGAATGCTTCTACGTCATGGCCATGGACGAGCTGGCCAGGGTCACCGGCAAGGAAGAACATCAGAGGGAGGCCGAACGGGTCATGGACCTGATCGTTCACTGGGTCCGGGTCGACCCGTCGGGCCTGGGACGTCCCGAGATGCCAGGCGATGCCCCCGTCAACCAGATGGCGGTCCCCATGATGCTCCTGTGCCTGGCGGAGCAGCTGACGGCGGAGCGGGTTGTGCTGGGGGAGAAGTACAGAGAGCTGGGCCAGTGGTGTGTGCAGCAGATCCTGCAGCACGTTCAGAGAGATGGGGCGGCCATTTTGGAAATGGTTTCCACAGAAGGGAAAGAGCTGCCTGGCCATGCCCTGGAGGCCGGCTGGTTCCTGCTCCAGTACGCCGCCCGGCACGGGGACGAGGGGCTGAAGAAGACGGCCGTGGAGAAGTTCGTGCGGCTGCCCTTCGAGACGGGCTGGGACGCGGCCCACGGCGGGCTCTTCTACTTCCAGGACGTGGACGGCCTGTGTCCCACGCAGCTGGAGTGGAGTATGAAGCTGTGGTGGCCACACTGTGAGGCTCTCATCGCCTTCCTCATGGCCTACAGCGTGACCGGGGACCCTGCCCTGCTGGACTCGTTCACCCGGGTCTACGACTACACCTTCAGCCACttccCGGATGAGAAGCACGGGGAATGGTTCGGCTATCTGACCCAGCAGGGTGCGGTGTCCCTGGACTTCAAGGGAGGGCCTTTTAAAGGGTTTTTCCACGTGCCGCGCTGCCTGTACATGTGCGAGTGCCTGCTGGACGGCCTCCTGGGACGCCCCCGGGCCCTGTGAGACTCCACAGGGCGACCGGACGCTTCCTCACGGTCGGACCCAGAGGTGGCGTGACCCTGGGGGGGCGAGCACGCGTGTCTGAGGAGGGGGGGGCTCAGCGTCTCATCACAGGCGTGGAGGTCCACCTCGGTATCAGTTCTGGCGACACAACGCCTTGTTTTTTAATCACTAGAATGGGTTGCGATGGTGAAGTGGGGTCCGCGGGCCTTCAAGGTGTGTCAGTTGGCGTGAATGGAATAAGGGCTTCAGATTCGACTTTCTTAGACCTCATCTTTACCTCTTGATGCTGTTACTCTGCTATGGGACATGCGCCTTCGATTTTTGACTAGGCCTGGGCCCTGTTGCATTGTGGGAGCTCGTGCTGCCTTCCTAACCCGACCCTCGAGCTCAGTGCTTGATCTTTTTACCTCAAACGATCTCTCACTCCATCCTGACACTCCCTTGCTTTGGGTTAACAGCCTCTATCCCTTCTCTGGCCTCGATCTTTACACCTCTATGGGGgtcctgctccctctctccagtGTGAACTCTGACCCCTCGCCCCCCAGTTTCCATCTCTAGACTTTCTCTAACACGCATCTTGACTGAATGGCTTGAATGAAGTGAATCCGCACCGCTTATGAAAACGGGCCAAACGCAAGGGAAGCCGCTTCACTTCCTGGCTGCTGCAGATTGCACTCGCTCTTAATGAgatatttggttttattttcttgaactgCAAAGCACTTTCACTAGCAAAGGGGCGGTGTGTGGTTTAAACATTTGACATTAGTCTGTTTTAACTGCGGGGGGTGGATCTCACAGGACAATCTTTCTCACCACTGTGTGACACTGAACTCCAATATCATATAAAAGAACATGTCTTTTGTATACACTGTCTCTTTCTCGTGTATATCCTTCACTTCGTAAGAATGGTAACCCCACTCCAGACCACCTGTCCTGTAGgctgtgttgtttgtttacCCGAGGCCTCACTGTATCACGCTGCATTTGCgttgtttgtaatttgtttagtcACACACTGTAACCGAAGCCGCTGAGGCCGgtcaaattgaattaaatcttATAAGTGTcggaataaaaactaaaactcccACTGTGGACCCTGTCCTCTGCATAGTCTCCGGTGTCTTGTCCTCAGTTGTCTGTCAGATGTTAAGTGTTGTTTTTAAGCCTTTAAgtgtcccccctcccccaaccacTAGagtgtcattttttaatgttgcacTGTCTGTGCGCTATGAACATCTGTCGCCGCATCTGGCAGCGACTCCTAACGAAGCGATCCTGGCAATCGAGTCGTGTGAAGGGAAGGGGACCAACTTGTGCCGAATCAGCGCTGAATGGAGCTGAAGAAcggatctgtgcaaaactgatct

Function

GO: NA

KEGG:

id description
K01787 RENBP; N-acylglucosamine 2-epimerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72524 lncRNA upstream 278327 42629539 ~ 42636453 (+) True G58008
TU72499 lncRNA upstream 436668 42477715 ~ 42478112 (+) True G57987
TU72493 lncRNA upstream 446178 42468308 ~ 42468602 (+) True G57981
TU72470 lncRNA upstream 479628 42432920 ~ 42435152 (+) False G57964
TU72466 lncRNA upstream 479656 42432877 ~ 42435124 (+) True G57964
TU72671 lncRNA downstream 10950 42938007 ~ 42938874 (+) True G58123
TU72700 lncRNA downstream 79544 43006601 ~ 43010002 (+) False G58148
TU72699 lncRNA downstream 79567 43006624 ~ 43010050 (+) True G58148
TU72734 lncRNA downstream 285653 43212710 ~ 43213028 (+) True G58178
TU72753 lncRNA downstream 322346 43249403 ~ 43249641 (+) True G58195
AMCG00009627 mRNA upstream 1288 42891698 ~ 42913492 (+) True AMCG00009627
AMCG00009625 mRNA upstream 26289 42887108 ~ 42888491 (+) True AMCG00009625
AMCG00009619 mRNA upstream 28061 42862696 ~ 42886719 (+) True AMCG00009619
AMCG00009620 mRNA upstream 52156 42862403 ~ 42862624 (+) True AMCG00009620
AMCG00009618 mRNA upstream 57800 42845136 ~ 42856980 (+) True AMCG00009618
AMCG00009626 mRNA downstream 33910 42960967 ~ 42972378 (+) True AMCG00009626
AMCG00009631 mRNA downstream 50072 42977129 ~ 43003322 (+) True AMCG00009631
AMCG00009632 mRNA downstream 124216 43051273 ~ 43052391 (+) True AMCG00009632
AMCG00009633 mRNA downstream 178422 43105479 ~ 43112950 (+) True AMCG00009633
AMCG00009636 mRNA downstream 262548 43189605 ~ 43213919 (+) True AMCG00009636
TU72303 other upstream 836539 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 1920121 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 2809832 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 2965580 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 3477785 39434900 ~ 39436995 (+) True AMCG00009480
TU72919 other downstream 1005895 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 1459440 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 1640308 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 1657505 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 1705693 44632750 ~ 44651967 (+) True G58600

Expression Profile