RNA id: AMCG00009636


Basic Information

Item Value
RNA id AMCG00009636
length 4425
RNA type mRNA
GC content 0.56
exon number 18
gene id AMCG00009636
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43189605 ~ 43213919 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGTCTAGCGTGTGGTTCCAGAATTCAACAAGGCCCCCtgcgtgtgtctctgcaggagcCGACAAGCTGCGTCTCTACAGCAAGGAGGGCCCGTGCACTGGGCGTCTGGAGCTGTACCACCAGGGCGAGTGGGGCGTGGTCTGCAACAACGGGTGGCGCAAGGAAAACAACGCAGTGGTCTGCCGGAGCCTGCTCTGTGGCTCTGTTGGCACTGAGACCAGAATACCGCACTACCCCGATTCCCCCAGAAAGGCCTGGCTGAACTACGTCAACTGCCAGGGCAACGAGAGCAGCCTGTTGGACTGCAGGTTCTCTCGCCAGGAGTACAGCCTCTGCAACCCTGAGGTCCATCACGTCAACATCAAGTGCTCAGGTACCCCCTCCAAACACCCACGCGCCCCTTGTCTACTCGTTTGTCACCCTGCGGTCTCCTTGGGTTGGTCGACCATAATCTTGGCTGCGTTCTCTTTGTTCTCCACAGAGGATGTTGTGCTGAGGCTGGCCGGATCGAGGGACAGATGTGCCGgcacagtgcagttcaagggcCAGAACAATAACAGTGACAGAACCATATGCTCTGAAAAATGGGGCAAGGCTGAGGCGGACACCGTGTGCAGGCAGCTCGGCTGTGGCGAGTCCATTCACACGCACCACCATGGGATATTCTCCGGTGAGCTGAACCCCATCAACATCTCCCTGGACTGCAGTGGGACGGAGAACTACCTGTGGCAGTGCGTCAACAGCACCAGCCAACAGTGCACTGCACCCAAGAACCCCAGCGTCATCTGCAAAGAACACAAGTCTCTGTATCTGGAGGAAGGGGGGCATCTTTGCTCTGGCATAGTGATGGTGAAGGATGGATATAGACCTGCCTCCAGCATCGATGACCCCAGCCGTGAATGCGCCATGCTGCACTGTGGCAATAACGGCACAGCCGGGCGATGCAATGACAGCATAGACAAGATTTGTCTAAACTGCTCAGACACGGTCATGGTATCAATAGGGGATAAGGGCAAGTGCTTCGGGCACGTCCTGGTGCACAGAAACAGCCAGTCAAGGCCAGTGTGTGGCACCGCCTGGGACCGCAAGGATGGTGAAGTGGTCTGTCGGGAGCTGGGCTGCGGGGATCTCATCGCGGTGTCTGCCAGACCAATTAACACCTGGGGCCAGCTGGACAGGGTGGAGTGCAAGGGCAATGAGTCCACACTGTGGCACTGCTTAGCTGAGCACGACAAGCAATGTTCCAGTCAGGCCACTGTAATCTGTGCCAACAGTGTGACGGTGCGTCTGGTAGACGGTTGGAGCAAGTGCTCGGGCAGAGTGGAGATCTTCTACAGCGGCCAGTGGGAAAGTGTGACAACCCACAGGTTCAACAATACTGCAGACGTGGTGTGCAGACAGCTGGGCTGTGGCAGAGGGCACACAAAGGGGAATTTCAGCAAGGCGAGGAGTGTCTGGGTGGAACACGCTCTGAACTGTGAGCCGAGTCATCAGAACATATCGGAGTGCATACCACGGTCCAAACAGCCACCACAACAGCCGATGGAGCAAATGATGGTCATATGCGAAGGTGATAAATCCCTGTACCTTGAGGGCGGGGAGTCGGCCTGTTCGGGGTTTGTGAAGATaagaaacagtaacaacaacGGGCACCTCCGTGAGGGATCTTTGGACGAGAAGGCTGCCAACGTGGTGTGTGGACAGCTGCATTGTGGACAATTTGACTCTTTTCTGAACAAATCGGTCTCAAAAAATATCTGGGACTACAAATACAGCTGCACATCCAACGAGACCAAGCTGTTTGATTGTCAAGAGCAGCAGACAACAGGAGGGAAGGGACCTGCTGTTTACATCAAATGCTCAGGTGCCATATCGGTGTGGCTCAAAGGGACAGATAGCAACTGCTCTGGGGTGCTGGAGGTGTGCTGGCAGGGAGACTGCGGAGGGGTGTGCGCGGACATCTGGGATCCGAAGCAGGACGAGCTCGTGTGTCGGGAACTGAAGTGTGAAAAACCGCAGACACCGATCACGAGGCAGATGGCCTTGCCCGCCGTGTCCAAAACCCTGCTGAAGAGCATGCACTGCAGGAGCAAGGAGAGCTTTGTGGGCCAGTGCAGCCTCATCCCCAGCGACAGGCCAGAATCCTGCCTGAACTCTCACGTCTATGTGATGTGCGAAGAAAGTGTGAGTGTGCGGCTGCAGGACCCCAGCAATAAGTGTTCAGGCAGTGTGGAGGTCTACCATACGGGGTCCTGGCACCCTGTTTGCAGCAGTACTCTCACTGACACCGTGAAGAACACCATCTGTGAGGTGTTGAAGTGCGGGCGCTCTACCAATGTGAAAACCACTGCCCCCTACAGCCCAAAGACAACACAGGGACTAATGAACATCGTCTGCACCGACACGTCCAACTCGCTGTCCAAATGCACTATTCAGCCGATAATGGGCAACTGCGAACCTGGTAGCATTCAATGCACGGGCTGGGCGAGGATGCTTCTCGCAGGGTCGGAGCCGTGTGCGGGCACAGTGTTTGTCCTGGATGACGCAGGCCTCCATCCTGTCCGTAAGCAGATGCTGAATGAGACCGCAGCCCAGGTCCTGTGCCGGCAACTGCAGTGCGGGACTCTCACCAAGCTGGAGAGCAGGACAAGCAAATTGGAGAGATGGTGGAACCAAACTTTCCGGTGCAACGGCAAAGAGAGACGGATCTGGGACTGTGAGACAAGTGAAATACACTATAGCGACCAGGAACAAGCCTCCATCCAGTGCTCGGAAAACATTACGGTAAGACTAACTGGCAATTGCTCTGGGGAGGTAAAGATCTCTTACAAGGACAAAGAGAAGGGCGTGTGCGACTCTCACTGGAGCCAGACTGAGGCTAACATCGTTTGCAGACAGCTGAATTGCCGGGGGGCACTTTTTCCCTTTTCGCCGAAGCCTGGCAGCAAGTATCCAGATCTAGACCTACACTATGTCCAGTGCACGGGCAAGGAGTCGCACCTGTGGCAGTGTGGAACAGCAAACACCGGGAACTGCGATGGCAGAGCTGTCTCTGTGGCCTGTGGAGGTGATGCTCGTGGGGTCTGTCTGGGTTCCTTTTCGGGGGGGTGTTTGAACATCTTGAGCTACGGAGACCACAGTCGCTGCTGCTACTTAACATCCGTGCGGGGGAAGACGCAGTGTGCCGGAGCCAGATACATCTTTAGATgtaGCATCAAGGTCAAATTTGCAGATCACTGTGGCGGAAAAGTTGAGCTTCAGAACGGAGATGATTTGACAGAAATCTGTCCCCTGAAGAACTTGGATTCTCCAGAGGCGGAGCTGTTGTGTAAGACAGCGGGGTGCGGGATGCCCCAGGATATCAGAGAAGGGTTCTCTGACAAACGCAAGTGGAggactgaactgaactgcaaCTCAGGGAAATACCTAGAGGAGTGTTTCAATAacaaatcatgtgacacacatGGTATGGTTTACTGCAAAGCAAATTCAGTTAAACCAAGGAGATCGGTGACTTCGTTAAGTGTTTCTGAATATGAGGATGTCTCTGGCAATGAGGACGAGACGTCACAAGTGTTCCCGAACAGCATGGGTGGGTACAGAGCGCCGAGTCACACCCGCTACGCTCAACCGCGAGAAAAGGCACCTCCTGCTATCGACGACTTCCAGCCCTCGAAGTGTCAGAACGTGTCAGAACTCCACAAACAGAAAGCAGCTCAGCCCATACCAGACAGAGATGTGGATCTGGAGAATGGTCTGCGTGCCTCGGCGACATCTCTCAGCGATTACGATGATACGGCTGATCCAAGCATGGCCCCCCCTCTGCTGCCACCCAGAGAGGACTGTGTTGACGACCGAAAGAAGGAAAAGCTGTCCGTTGGCAACATGACCTCAGATGACCAGGATGACTACGATGATGTGGACATGGCACCCGAGGAGCCGGGGGACACGGAGGCCGCCCTGGAGCCAACTCTGCTGGAAGAGGACGCCATAAATTCAGTGCCGTCTGGAAGTGGGTCATTGCGGTGGGAAGGAAAGATAGTCAGGATGCTGGGGGTCCCCAGTGAGACCCTCTGGCCGGCGTTTGAAAGGGGGCGGCTCTGTGTGGGAGCTGGAGACAGAGCTGGGGGGCTGCCAGGCTGTGAGCGGAGGCTTAACTCGGATCACAGAGCCCGGCTGTACCCAGCGGGGCTAATTTGCTCTGGCCCGGACATCGCGGACACCATCCGTGGCAACCTGGCGTCCAGGGGGGACGGGCTGGTCATTAGGAGACAGAGGAGTGTGACTCCCCCCCCTTACTCCCTGTACACGGCTCTGCTCAGGAACCGTGGAGCAGTGGGGCTGCGGGGGGCTCGGCTCGGGTGTAACTCGAACACTTCCAGAAAGGACGCTGCACTTGGCGCAGTGAGCCCCCTGCACCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72699 lncRNA upstream 179555 43006624 ~ 43010050 (+) True G58148
TU72700 lncRNA upstream 179603 43006601 ~ 43010002 (+) False G58148
TU72671 lncRNA upstream 250731 42938007 ~ 42938874 (+) True G58123
TU72524 lncRNA upstream 553152 42629539 ~ 42636453 (+) True G58008
TU72499 lncRNA upstream 711493 42477715 ~ 42478112 (+) True G57987
TU72753 lncRNA downstream 35484 43249403 ~ 43249641 (+) True G58195
TU72776 lncRNA downstream 95941 43309860 ~ 43311062 (+) True G58215
TU72773 lncRNA downstream 104997 43318916 ~ 43324579 (+) True G58214
TU72836 lncRNA downstream 225480 43439399 ~ 43444317 (+) False AMCG00009647
TU72871 lncRNA downstream 464432 43678351 ~ 43680953 (+) True G58291
AMCG00009633 mRNA upstream 76655 43105479 ~ 43112950 (+) True AMCG00009633
AMCG00009632 mRNA upstream 137214 43051273 ~ 43052391 (+) True AMCG00009632
AMCG00009631 mRNA upstream 186283 42977129 ~ 43003322 (+) True AMCG00009631
AMCG00009626 mRNA upstream 217227 42960967 ~ 42972378 (+) True AMCG00009626
AMCG00009628 mRNA upstream 262548 42914780 ~ 42927057 (+) True AMCG00009628
AMCG00009639 mRNA downstream 38283 43252202 ~ 43253062 (+) True AMCG00009639
AMCG00009634 mRNA downstream 44601 43258520 ~ 43266899 (+) True AMCG00009634
AMCG00009635 mRNA downstream 54008 43267927 ~ 43273372 (+) True AMCG00009635
AMCG00009640 mRNA downstream 101709 43315628 ~ 43318501 (+) True AMCG00009640
AMCG00009646 mRNA downstream 202912 43416831 ~ 43424850 (+) True AMCG00009646
TU72303 other upstream 1111364 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 2194946 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 3084657 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 3240405 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 3752610 39434900 ~ 39436995 (+) True AMCG00009480
TU72919 other downstream 719033 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 1172578 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 1353446 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 1370643 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 1418831 44632750 ~ 44651967 (+) True G58600

Expression Profile