RNA id: TU72466


Basic Information

Item Value
RNA id TU72466
length 2248
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G57964
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42432877 ~ 42435152 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAACAGTaacaatatacttttatttacagtttaatttttacaaatgtatatctttgcattacaataaaataaaatgttggggATATAAGAAGAATAGTTCAAGTCTagagtaaacaacaacaaaaataaaggtttaaaacCCATTCACTCCGTTGGTGGAGGATTCCAGCATGTTTGTACTCGAGGACCAGATGAGATCAGGTTTATTTGTAGGACAATGTTTGATTGCGAACGCTTGCGAGGTAAAAGTACAATTTGTGAAAACGGGCACGGCAATAAcacaaagatattaacacacacacataaacaaaaaacagctgcagCGTCCCAAGTGCGATCAACCGATACTTTTGATGTCCGATTTCCGAACGTTGAGATTGGGACGTTCTTTGGCTGTGCTGGGGGTGTCCTTCACCCTTTTCCCTTTCCCTGGCAGTGAGGAGGAACCCTTTACACACAATCAAGCCTAAAATGCAACTGGCagaaaggaatacaaaaaaaataaaatcacataaaaACCTAAACCTACAATTAAACGAAcgtccctccctcccccttcaACGTGTTGGGATTTAAACTGATGGAAAGACCAGAATGAAGGTGAGGGAGTTTGGGACACTGTTAGGGTTGGGAGAGGAGTGAGGACtttaggatttaaaataaaaagaatgaaaacactgGTATTTTTCCGTTTTGTTCCGATACTCTTTATAAACAATATTGCGTCAATGTTACAGAGCATTAAGtgacatgtatgtatgtacaaccatatttggattttctttaaagaaaaagaaataatttACTACTGGATAAAAACTCATTCATCTAATTTCACATCTTTCCTTGGCGAAACCCACGAAATGCCTACAAGTAACACACCTGAACCTTAGACTTGAACAGATAGTATGCATGAACAATGCTGATTACGGCTCAAAAGGCAGGCCGGGAGAGCAGACGCCAATCTGCCAAGACTACATACAGCCTCGAGGACTAAGGACAGTCGGGTACAAAAGGGGAGTGCAATGCTACTGCAGCCCTTCAATACCAGATTCAATCCCCAATCAATAAGCACATAAAtaataaccatttaaaaaaaataatgataaaaaacattacacacaccTGCTACACAATGCATACACATGTGCATTGccaaacatttttcacatccaTGTTGTTTCTGCTCCATTCCAGTTTACATGGCAAAGGCTTAAGATTTCATTGAATTAAAATTTTAGAAAAGAACAGAAgcaaagcaagcaaacaaaaagacattgaTGTATAAAAAGTCTCTGTAATACTATCTTCTTCTTCGCTGTACACAGGCTGGTTTCAAAGTGTCCCAAAACATTAATAGTCAAGAAGCAATggatacaaaacacaaagccagAGACTTCAGGATCTTCCTTAttgattgtgttgttttcaacCCTTTCAACCTCTAGGTGacagaaatgttacaaaaacgACAGAGAATCGTATTAAGGGATCATTAAATACTGCAAAGGGATTACCGGAATGCTAGGGATATGCTTTTGTGCGTTTTGACTAGGAAACCGGCCTAacctacagacacacaaacacactcgcGTGCGTACAATACACAGAGTCTATACATGTTTATTCCAGGGGTGGGATTGGGGTCAAGCCATTGCAAATCCTGTAAATCAGTTAtatcaaatcaatttaaaaaatgttccatAAGTAACTAGTAAaaccaggagagagaaaaaactattttcccAGCCAGAATCAGTTTTGAAGGGATAGCTAATCATTCTAAGTTTGACGAATACTGGATACAGGGCAAAGAAGCCATCGGATAAGGGCAAAAGCAGTAGGCATCAGTCTTGCTTTTCAGACGAATTGGGAATTGTGTGCACTTTGATTCTCTCAGAGGGCTCTGTGTTCTGCATCTCCAATAAATGAAACCAATCTTCACTTTCAACGAGAATCAgctttgcttttgctttggATGGAGTTTtccaaagaacaaaaacagcacaaaaaataagcaatcaAAAGGAACACTACAAAGTTTAAAAGGAAGATATAAAAGCTATATTGAAATGCACacgtttacaaaaaaaagaagaggatCCTACATTTCCACACAATAGTCAAggaaggggaagagagagaccGCCACCCCCCCCGGCCTCCCAGCCCACAACACAACTCAGGTTAATCTGCCAGGAAACCAATACAAACATGCTAGACGCATCCAAACAGAAAGGTCACTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72449 lncRNA upstream 4829 42427842 ~ 42428048 (+) True G57948
TU72448 lncRNA upstream 12054 42418590 ~ 42420823 (+) True G57947
TU72447 lncRNA upstream 14372 42418141 ~ 42418505 (+) True G57946
TU72446 lncRNA upstream 14768 42415590 ~ 42418109 (+) True G57945
TU72439 lncRNA upstream 30425 42402235 ~ 42402452 (+) True G57940
TU72493 lncRNA downstream 33184 42468308 ~ 42468602 (+) True G57981
TU72499 lncRNA downstream 42591 42477715 ~ 42478112 (+) True G57987
TU72524 lncRNA downstream 194415 42629539 ~ 42636453 (+) True G58008
TU72671 lncRNA downstream 502883 42938007 ~ 42938874 (+) True G58123
TU72700 lncRNA downstream 571477 43006601 ~ 43010002 (+) False G58148
AMCG00009600 mRNA upstream 17332 42414205 ~ 42415545 (+) True AMCG00009600
AMCG00009594 mRNA upstream 33546 42385499 ~ 42399331 (+) True AMCG00009594
AMCG00009591 mRNA upstream 134787 42290154 ~ 42298090 (+) True AMCG00009591
AMCG00009593 mRNA upstream 152448 42275999 ~ 42280429 (+) True AMCG00009593
AMCG00009586 mRNA upstream 161680 42266822 ~ 42271197 (+) True AMCG00009586
AMCG00009595 mRNA downstream 11833 42446957 ~ 42463730 (+) True AMCG00009595
AMCG00009604 mRNA downstream 53313 42488437 ~ 42489969 (+) True AMCG00009604
AMCG00009606 mRNA downstream 96593 42531717 ~ 42546719 (+) True AMCG00009606
AMCG00009605 mRNA downstream 131496 42566620 ~ 42570939 (+) True AMCG00009605
AMCG00009608 mRNA downstream 160969 42596093 ~ 42599734 (+) True AMCG00009608
TU72303 other upstream 354636 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 1438218 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 2327929 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 2483677 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 2995882 39434900 ~ 39436995 (+) True AMCG00009480
TU72919 other downstream 1497828 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 1951373 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 2132241 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 2149438 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 2197626 44632750 ~ 44651967 (+) True G58600

Expression Profile