RNA id: TU72524


Basic Information

Item Value
RNA id TU72524
length 4627
lncRNA type read_through
GC content 0.45
exon number 2
gene id G58008
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42629539 ~ 42636453 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCCACAGCAGGGCCGCCCCATGGCCCCCACCACCCAGCAGCCCCGGCCCTCCGCCCAGGGACAGGGGGGACCGCTGGGGATGGCGGGGGCGGGAGGAAGGCCCCCCATGCAACAGAAACCGCAGCCCCCCCAGAAGCCCAGCCAGGACCACCCCAGCATGGGGATGGGCGGCCCCCCTCAGTTGAAAAACTACGGCAGCTCCCCGTTCCAGCCTTAGCCAAGACGAGGTGAAAGCCGAGACGATTCGCAACCTGCGCAAATCCTTCGCCAGCCTCTTCTCGGACTGAGGCCAACGACACACCACCACATACACATTGCCGCCAGCCatcacctccctccctccctcccgccGTGCCCCCACAAGGCCCCTGGACTCGCACATCCACTCCTCCATCCCCCCACCGCCACCCACTCCACCCGCCACCCCCAATGGAGCCTCGCGGACGCACGGAAAACAAGACACGATGGACAAGACAGAcgaagaaggaaaaaagcaagaaaataaaaaaacaagaaactacacattttcaatattctAACTGGCCAAATCGACGCGGCACGCCCATCCGCGTCTGTACGAAAGAAAAAAGGCATCATGAACGCATTCGCATCATCCACGGCgatgaacagaaacaaaaatctaaatcgccaccccctcacacacacacaaaccaggtCCCCGATTCTTCTCCAGAGGGCTCCCTATAAAGGACCACGTTACCCACCTTTCTGATacaagcatgttttttctttttagtttggttctgtttttttggggttgttttgcATCTTCTACCGTCGCttgtggaaaatgtgtgtgGCTTCTCCTCCTGCTCCCCACTTCCTCCTCTGGCAAACAAGTGTAgtgttccttaaaaaaatataatatcaaatcgaaaaaacaaaacacaaaaaagagcCCTGGATTTTCCCCAACGTTACGCTATTTTCTCcataatgcaaaatgttttggaGGCAATATCACATTCTACTGATACTTAGTATAGATGCACTGGCACAACAGTACAACACACAGTCAGACTCTGTACCAAAGCCGGCCTCAGCTTTTCTCACTGGTCTACAGTGTATCAGTGCTATTGAAGTATTCCTCGCAGCTGTTGTTCTGAAACTTGTCCCTTAGTGGTCTTTGGCTTTCTGGTGTAAGTTCAAGGCAATGCAGGAAACACACTGGACAAGCTTCAACCCAAATTAGATTTTAGCAGTCTGCGTCCCGAGCTGAACTCAGTCTGTTAAATGGCCACAGCTGTTTAGTTTCCAGAGATGCACCACAGGGAATGAAGGCGATGAACAGTTTACCCTGAAGGGATAATTGGGTCTACACTTGGTCATATTTTGATCACAGTGTGATCGAAAGATTTAGTAGCGGAAGAGGAGGTGTGTGGGATGGGGGGTGATCCACACGCATCACATAGCTAATCGTAAACTTGTTGTTGCACATCTATAGTTCCTGTAGAATGTCTGTGTCGTTACTCTGGATATGATGTTGCTGCCTCCCTCtattttcccctctctctgtttctctctctatatgaGAATCCAAGCCCTAAATCTGGAAACCTGCCATTGAAATAAGCCAGTTCGCATTTATGTCTCAGGGATGCCCAGTACTGGGTGGTTTGTGCTCCCCTCCCCGACCTCTGACCTCCGACCCCAACAACATGAACTCGAAAACACGGGGGCCAACCTGTAACCTGGGCTGCCCACACAGTGGAGCAACGACCAACCCAGCCAGCGAGGAGCTAGCGGCCACACCTTCCCTACTGCCCGAGCTCATCCAGATATGCAAATAAGCACCCGATAGAAAACGGTGTCCCTGCTGGAGCTGTCCCTCTGCAGGGGTGTTTGCAGACACAAAAACCCTGAATTTGTTCCCCATTCGGTTCCCACTGTATTCACCTGATGCAATGTCCATCTGGGTGAGGTGCAGAAAGCTCAGTCTGCTAAAGGGATGGATGCTCGagagcagaggaggaggaggaggaggaggaggaaagagaTTTCTCAGACCACAAGCGCATTCGATTCTCACCCTGCAATCTGGGAACGGTTTTCTGAAAGGACTGCAGGGAAAGCAAAAGCAGTGGTTGATTAAACATTCCAAGTTCATTTTGCTTTCTgcagtccccccccccacacacatatcagaaatgaaataaaaatcgGTCTCAGTTATTCCTTCTATACAACATAAACTCCTTTTACAGCCTGGCAACTTTGAATTGCAATTCTcctgccagccagccagtcagCCAACCGGTACCAGTCCACCTCCCCCTCCATTGGTGAGCGTCTCCAGTTTTAGGGCTTTGTAAACCTATGCCAAGTAATTTTATGACCAAGTTCCCCTTTCCCGTCTTCCCATGCTCCCCCCCCCCTGTTGTTTTCCCTTCCTCTCATTCTGTTacccttccctctctccacccTCCTCGCCCCAATCTGCCCCGAGAGACTCCATGCTCTTGCTCTCCGGGGCTAGAATTGGCATCATCTCAAGTCTTGGGGGGGGTTCTCCTCTTATCATGTAAACGATAGGGAAGAGGTCAACCGGTTAGTGTGAAGACACTGACAGGACGCCCAGCGGTCTTACGTAACGGTTTGGACTCTGTTCTGTGTAATTGAAGAAGGACATCTGagattacacattttatattggAGGGATTTCCCAGATTGATGTAGGGGACACTGATCGTGGGACGGTCCTCACAGATTAACTCAGCTTGCTTGTCTTAAGGGCGAGCTGAGTGGTGGAGATTGTGCACCACACCGTTAAAAGAAAAGAACCATCATTTTGACTGCTTCTTCCTTCACCATCCAAAGTGGACTGAACAGAAGTTTGTCCATTTTCTAACTGAAGGTTTTAGAGACGTAGGCCAACAGCACAGCGCCAGTGTCACTCTCAGGGGAAGAGAGGGCTGTGACAGGGATTGgtttaattgtctttttaataataataaatctgatGTTGGATCTATTCGTACAACACAGAATATTTTCCACTCTTTTCCTATTGTTGCCACCTTTGAATGTTGTTGCAATCCATGGGATTTGACTCTGTCTGCCTTTGCATATCAGACCAAGATacattccaaaacatttttaaaaaaatataaaaatatgcaatattctATATTAGCTTCTGTTCTGTATTTGCAGGCTTGTGAAAACCCAAAGCTAGGCTAGGCTAACTGAGCGCGTGATCATTCAATATTAAGATATCAGACCACCCTACCAACCATAACTTCCCTTTAGAAGATAGATGCAACTCCGTGAAGAAAGTTGAAAAGGAGGTGTTTTTTGAAGATGAAGAATAAGAAATATTAAGGGGAAAGCGGACGTAATGCtgtctttttattgttataGGCAACGTTTAACAGCCTTGACACTGTCACTATGCTGAACTCTAATCCCAGGCCACTGTACTGAGATGCTTCTTCTGGCCCCACACTCATTCCTCCCATCCCCCTCCCAATTAACGGATTTTGCCATCTGTAAATACACTCTCCCCTCGCGTCGAGCCCCTTGTGAATCCGAAAGTGAATCCTTGTGACAAGCGTGCATAAACGTGTAAAAGTTGTACCGtaaactgtaaaaccaaataaaagtATTGTACAGTTAGTGACTTAATATGATGAAACATGTGAAGCTTTTGTCTATTCTctttgaaaaaaactaaacgaaaaaaggaaaaaaatgttagttttttttctgtgcctgTAGTTggcgtttgtgtgtgttgatgaatgctcactgtatattttgtatcgttcgtttatttgtttacactttatttatCGAAGTTTAATGACCCtagccaaaataaatatacaataattaaaaaatatatataatgttcagCTCTTCAAATGTAACCGATTTTAaagtttttggttgttttgatctgtaaagGCAGGGACATTTGTTGAGATTATGCAATGCAGACAGTCTTCTGCTGCActataatttacatttctgaaaaaaggaAGGTCTTTTCTTATCCCCTGAGTTAAACATCTTAGGGTGTTGCATTTTTCAATAGTTCACCACTGAGTTCACTTTACCAGAtccagtttgttttcttcagtttatcCTGTTTTGTCTTGTGCAGTAACTgatgcttttgtgtgtttgtgaactGCACAGGCGAGACAGACATTCCCGTGTGaacaatatgcattaaatatcttatagttttttttgtctccGAGTATTGCAaatgcttttgttattttatttgattgtcgAGTTTATTCTATGaggttttcttaatttaatgaCTGTGTTGACTGAAATCtgaatgtacattttctgtagtGCAATATGATGTTCTGAAATTTGGatcactgtgtttgtttgtttgacgcCTCGTGTATTGTATAAAGCATTcaatttaagaaataataatttaaagaatatatatcaaTTGAATTGTAATCCATTGCCTAGTTAACGTGACCAAGCTGTTTTGTGAGATATCTACctgtacaaaaacatgtatCTTCGATGTGATCGTAGGTGTGACTAactaaatatggaaaatatattaaattattgtgcTATCAAAAATCCAAGAAAGAACTATTAAATAAAGTCTATTGTTAAAGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72499 lncRNA upstream 151427 42477715 ~ 42478112 (+) True G57987
TU72493 lncRNA upstream 160937 42468308 ~ 42468602 (+) True G57981
TU72470 lncRNA upstream 194387 42432920 ~ 42435152 (+) False G57964
TU72466 lncRNA upstream 194415 42432877 ~ 42435124 (+) True G57964
TU72449 lncRNA upstream 201491 42427842 ~ 42428048 (+) True G57948
TU72671 lncRNA downstream 301554 42938007 ~ 42938874 (+) True G58123
TU72700 lncRNA downstream 370148 43006601 ~ 43010002 (+) False G58148
TU72699 lncRNA downstream 370171 43006624 ~ 43010050 (+) True G58148
TU72734 lncRNA downstream 576257 43212710 ~ 43213028 (+) True G58178
TU72753 lncRNA downstream 612950 43249403 ~ 43249641 (+) True G58195
AMCG00009610 mRNA upstream 822 42608497 ~ 42628717 (+) True AMCG00009610
AMCG00009608 mRNA upstream 29805 42596093 ~ 42599734 (+) True AMCG00009608
AMCG00009605 mRNA upstream 58600 42566620 ~ 42570939 (+) True AMCG00009605
AMCG00009606 mRNA upstream 82820 42531717 ~ 42546719 (+) True AMCG00009606
AMCG00009604 mRNA upstream 139570 42488437 ~ 42489969 (+) True AMCG00009604
AMCG00009607 mRNA downstream 5740 42642193 ~ 42649279 (+) True AMCG00009607
AMCG00009614 mRNA downstream 26941 42663394 ~ 42665431 (+) True AMCG00009614
AMCG00009613 mRNA downstream 38775 42675228 ~ 42688453 (+) True AMCG00009613
AMCG00009617 mRNA downstream 71304 42707757 ~ 42722609 (+) True AMCG00009617
AMCG00009618 mRNA downstream 208683 42845136 ~ 42856980 (+) True AMCG00009618
TU72303 other upstream 551298 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 1634880 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 2524591 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 2680339 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 3192544 39434900 ~ 39436995 (+) True AMCG00009480
TU72919 other downstream 1296499 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 1750044 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 1930912 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 1948109 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 1996297 44632750 ~ 44651967 (+) True G58600

Expression Profile