RNA id: TU72773


Basic Information

Item Value
RNA id TU72773
length 4611
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G58214
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43318916 ~ 43324579 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atattttattatatttatatcacaAGCTATACATAAAGAAAAGCAGGGCTGGCCGGCACTGTGGCCAGAATTGTTAGACAGTTCACGGTTTTCACTGCCACTGAGAGATCCGGTTGGCTTTATcaagtattgtttattttccaatgtttttttttttttttttttttaataggataaCTTCTGCAATCAGACAAATGAAGACTCcgccctgttttttttttttttatataatcttgCCTCCCATTAAAGTTGACCGAACTCCATTCCCAACTCAAAAGCAGTCTTTAACGAGACGTGTCCCACAAGCACACCCGCACACAAAACAGTCTGCACTTGTGCCACTTCACCAGAGATCTGTGCAACCAAAAATCAACGTCTGAACAGTCTTTCACATCACATTCTTCCAAACAAAataacgagaaaaaaaaaattacatagcGTGAAGACGAGATGTTTTCAAGTTTAACGTATATACACTACtgctttcattacatttttacaaaggTCTTTGGATCAAAAAcaaattttacttattttttgcttttaaggGAAGGGTTAGGGCTTTCAGTTGATGGCGGTCAAGctgtttatttcaaatgcataaTTTGGAACCAACAGTCTGCAACCGAACATTGCAGAATCACCGACCGCCACTGGCTATAAAACTCCGCCCATTTAGCCTAGGATTTGAAATGACAAGTCTTCCAAAACGCAGTGAAGCTTTCCCCCACAGTTCTACAGCCGTACACAGTTTATTCAAGACATATTAATGTAACAGTCTATAAATAAGATTGACTGGACAACTCCCTCTTGCAATAACAAAGGGTACTCAAGGATAACGTTCAAATttcaccataataataataataataataataaaaagctttcTTCCAAGCTTTTGAACCTTCTCCAGTAGACTTTATACAGCTGTGGATAAACAGTCACACAGCAAACACACTCAACCAAGTTAAATTCTCAGAACCTTTTGAAAAGTATTCAATTGTCCTACTAAATTATTCTGTGAGAACCGGATTAACATTTGCCACAGAAATGAACTTTCCGTAGTGTGCAAACAACTATATTAGTGTCAAATTATTACAGGGGGTCATCTTGTactgcatacacatacacacatacaaactgaGCACCTTAGCACCTCCTGCCCTCCTAGCTgacactatattaaaaaaatatattaaaatcctaatgccaaaaaaatacaaaacatgccTTTGCAGGTGGTACATTTTCACCAATATGGGTTATCTATCTGTGGATGTTATTTCAATGCTAGAAAATAAAGTGCTGTGGAGTACAGAGTTGTATTTCTGATTGTTTAGAGACTTCCAGTCCAGTTTATGTTGTCTCAGTGGGCAAGGAGTTACCTTTTTAAAACTTCTACAGTTCTTTCGATTGCAAGAAGGGTTATTAGGGTCTCAATTATCTCTTTAGCGACTGTACAGGTTTCCTACAGATCACAGACGCAGAATGATGCTCATTTCGCACTGGTTTCTTCAGCGGTCCGAATCAGATCTACGATCAGCCCTGGTAGTCCTTGATGCCCCACGTTCAGGGAAGTATGGGACAAGGAGCCTGGATAAGAGAAGTTTTCAAAGACGGACAGAATACATTATCACAAACTCCTTCAGACACTATGAGCAGTAGCCGGGATGCAATGGGGCACTTCTCTCTCACGATGTAGAAcacaatataaaagaaaacgcaaattaaaactgaagtgTTAAAAGCATAGCTAACTGCACGATACAGGGCTTTTAAAAAGGTTTGCAACGGCACGAATGCCTGCAGCACTTTCCATTTAATCTGTACTGCATAAAAATAATTCATTCAAACTCAAAGTGCCAATCCGACACAGGAACATTTGGACAATTGATCTGCAGAACACTTTAGTTTCTTGATTCCATATACTTTACAAAGTAGAAACTTGGAACAAGTATAAGACCTACAGGGGTTGCAGGGTTtactaaacaacaaaaaagcttcCAATTAAACTCTCTGGTCAAAAACCCTACAGAGTCTGCTAAGTCCTTATGAACAAACCCAACTGAGGTGGCTGCAGATGTTAAGTAGTCACGTGGTGTTTTTAAGTGGCTAATCAGGTCTAAGTGGGAGCCACGCTTGTTAATGACATTACCCTCAAACTGCACCAGGGAGAAACACGTCAATGGCCAGGGTTTGGATGTTGGCGAGATGGTGAATGGTGTCGTAGCACAGCTGTAAACTGTTGAAAACTGAGCGGACAAAGTGAGAAGACCAATGAAGTTACCCAAGTCGAACTGGACCGGGAGAAGAAAGGGGGCAAAAATATCCAGAAATCTGCAGCCCTGGAACACAACTGACAGCAGTCGGCAAAGATTGACTACAGCCAAAGTGTCACAGGACCGTCTGCTTTTGAGTTCCTCCAGAGCTCTCACCGACACCGACATGACcgaattaaatacaatttaaattaatgttttaaacattttttaggTTTCCAATAAAATGAGCAGGGCTCTTTGGGACCAGGAGTGAGATTCAGATCAACACTGGACAAATATTAGGGCAGGTGAGGGTAGAAGTCATATTCTGAAAGGGGGGGGGATCTATTTTGCAGGTGGTTATTATGTTGCTGCAGAAGTGTTCTCCCACATTAACCTCACTATGACATCATATTGGAAGTGCGTTGACACACCCCTACTGTAgcacaagtGTATAGGAAAGGAAGGGGGAGAAAATTAAAGCACgcgtgtatatataataatccaTGGCATAATTGCCTTTAACCAAACCACTGTATTAAGAGAGAAGCGGTTGAATGGCAGTTCTCTCATCTTGCAGAACAGTGTGTGAACGGGGGATTGGGCGGGGGAGCCTTCTTCTGAAGGAACCGATAATGATACTATATCACATATGAAGTAGCTGCAGATCCGAGACCCCACTGCAGGCTCGGACAGCAGCGACCCCCGTGGAGCACTTCAACACAGTCAAACGACAGCACAGGGGACAAAAACACGTCTTGAAAGCCTCCGAAACAAGAGGTAACTTTCAACTGACTTTGAACTCTCTCACCCTTTCAGGCTGCTGCCGCTATGAACAACAACTCTTTGCCTCGGACACGATTTTCCACTTTTAAGAGCAGATTTCTACAGGACTGATCAACAGTACGTTTTCACAAAGCAGAAGTCTAACTCAATGGACGAGTGTTTGGATGATGATTAGAAACTGTTCAAAGTAGGCTTTACCTCACATATTTCCTACATCTACCTAGTTTTATTTCAGAGCAGATTTGGCACCATGGTTAACGTCAGTTGACCCTCAGTTGTTAAACCAGACAGATCTGgcaaatttacatttaatgaaaagacCCCAAAGGCTCAAACACATTTCCCATAATCGTTTTCATTTGGTCTTTCTCTGCCAGCGTCCAAACCGTTGGTGTATAATGACGCAAACCAGTTTTACAGAAGACTGGAGGGATTTGGAAAGTTTGAGACTTGAACTAAACTGTCCTCGAAGTCTGAGTAGCTACAAATTGTGTTGTCACCAGCTAATTCACAGGAAGCTCTGCAATCGGCAAAATCACTCCATTCTAGCAAGAGCACCTCGACTGTCCCGCCTTGTGGATGAAGGAATTCACAGGCTTCAGTGACTACAGTCCGTCAGGATAGACTGCATGGGCTAAACAAGCTTCTCACCCTCCGCACAGAGACACCCTCCAGCACGGGTTACTAGGCATGAACTGACAGGTGCTAAATCACATGTGTTCTGCGTTTACACTATGCCTCTAACTGAGGTATAATTGGATGACCTGAATACGTTTCAATACAGTGGTAAACCTTTCTTAACCCACATGTATTATTTCTAACTGATCTCTGGAAAGACTGGCAAACGGGTATTCAGGCATctaggtgtgtgtatatatgctgCACACAGATTTTCCAGGCCTACAAGAGTTCCCACATGAGCTGGACATACTTCCAATAACCTAGAAAACATTTTCACCTTCACTTCTACAAAGTTAATCAAAAGTTACCTCCCGTTTCTTCAAAATCACCCCTGCAGAACTCCAACCTGCCTTGGTCTTCCACAACttcatacgcacacacacacacacacacacgcacacgcacaccacacacacgcacactgagcGACTCCTGTAAATggcatgttatttatatatgtacaccAGGGGAGCCTGCGTGGGGGTCCAATGTGGCTCCTAGGAGGCTTCCCTGGCTCCGGCGCCCCCTATGATCAAGTTGCGGAGGAGTTTCCGCCGGCCGGCCTGGTAGTCCTCCTCGTCTACGTTGACCAGCAGTTTGATGGCCTCGTGGCCCACGGCCTGCTTCAGAGAGTCGGTGATGAACACGCCCTTGAGGGCCTCCAGCAGGGAGCCATTGATGTAGTCCCTCCAGAACGCATCCAGGTACGTAAGTTCTGAGAACTTTATGTCGCAGATGATGGAGCCGAGGTCGCGCGACTTCAGGATGGTGTTGGCCTGGTTGAACCTCTCGAACTGCCGCTCCAGGGCCTCCTGCTTGTTGGAGAAGACGTTGCCCTGCAGGGCCGACTCGTGCTGGCAGTACTCTGCTCGCACCCGCAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72776 lncRNA upstream 7854 43309860 ~ 43311062 (+) True G58215
TU72753 lncRNA upstream 69275 43249403 ~ 43249641 (+) True G58195
TU72734 lncRNA upstream 105888 43212710 ~ 43213028 (+) True G58178
TU72699 lncRNA upstream 308866 43006624 ~ 43010050 (+) True G58148
TU72700 lncRNA upstream 308914 43006601 ~ 43010002 (+) False G58148
TU72836 lncRNA downstream 114820 43439399 ~ 43444317 (+) False AMCG00009647
TU72871 lncRNA downstream 353772 43678351 ~ 43680953 (+) True G58291
TU72891 lncRNA downstream 549202 43873781 ~ 43875723 (+) True G58304
TU72908 lncRNA downstream 585009 43909588 ~ 43915760 (+) True G58317
TU72912 lncRNA downstream 596895 43921474 ~ 43926631 (+) True G58319
AMCG00009640 mRNA upstream 415 43315628 ~ 43318501 (+) True AMCG00009640
AMCG00009635 mRNA upstream 45544 43267927 ~ 43273372 (+) True AMCG00009635
AMCG00009634 mRNA upstream 52017 43258520 ~ 43266899 (+) True AMCG00009634
AMCG00009639 mRNA upstream 65854 43252202 ~ 43253062 (+) True AMCG00009639
AMCG00009636 mRNA upstream 104997 43189605 ~ 43213919 (+) True AMCG00009636
AMCG00009646 mRNA downstream 92252 43416831 ~ 43424850 (+) True AMCG00009646
AMCG00009647 mRNA downstream 112411 43436990 ~ 43444420 (+) True AMCG00009647
AMCG00009656 mRNA downstream 347190 43671769 ~ 43720150 (+) True AMCG00009656
AMCG00009654 mRNA downstream 412018 43736597 ~ 43740863 (+) True AMCG00009654
AMCG00009653 mRNA downstream 418875 43743454 ~ 43748128 (+) True AMCG00009653
TU72303 other upstream 1240675 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 2324257 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 3213968 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 3369716 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 3881921 39434900 ~ 39436995 (+) True AMCG00009480
TU72919 other downstream 608373 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 1061918 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 1242786 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 1259983 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 1308171 44632750 ~ 44651967 (+) True G58600

Expression Profile