RNA id: TU72919


Basic Information

Item Value
RNA id TU72919
length 1370
RNA type TUCP
GC content 0.52
exon number 3
gene id G58324
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43932952 ~ 43935762 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGTGCTGACGATTCAGAGAGAATCTGACACAGAGCCATGTACCCCCGTCCCACTTCAGTTGTAAAACACATTGTGCATTCACGAAAAAACAATCAAGCGTCAgaagtattttcttttgaacCATAAATCCCTAGCAATTGCTTAAGTTTATAACCCCCCACCCCGGCACCTCCACATTTCATCTAACATTATTCTGTATAGGAGACTTTCCAAACGCACACTAGCATAGACATCAAGAGAACcacacattgttattttatcattaatatttttttatttatcctcAATCCAAATAATCTCTGAGCACACATTAAAGAGGACTTAAATTAGGACCAGGGTGTGCAATGGGAAGAGGTGAATCTGGGTGGCAGCAGCTATCGCACCAGAGGAGACCAGCGCTCATGACCGAACATACAACGCACTGCCAGTAGGGTTTAGGCATCAGCTAATCGGGCACAGCAAGAACACCCTTTCTGAATTCAGCAGGTGACAGTCCTCGACGTAAAGAAATGGAAAGCAGGGTAGTTGATAGaggatgtgttttttattaaggGCATCtaatcaaagaaataaacagattCTCTTGGCGTGCATTGTCCATTGCAACAGCTGTGACACTCCAGAGCTGCAGTCACTCCTCCCTGCTCACAGGGGGCAGTACGATCTTGCTGGGGTCATAGTAGTTCTCCTCTATGAGGGGGAGCCCTTGTGCCTCTCTTTGCTTGATCACCCGCTCTGCCTCCTGCCGAGCCCACTGCCtcatCCATGGTCAGGGAGGTAGTGAATAAAGGTGCCCCCGAGCACAATAGCCACAGAGATGCCAAAGAAGAACACTGTCTTCATATTCCACTCGTCAACGTGAGGGTCCTCGTGGAAGCCATGTCCGTGGCGGTCCCCGTGTCCGGCCGGCTGCAGGTCCGACACCGTAGCCGACCCCGCCGCGCCGGGAGAGCGGCTCTGCGACACCAGCCGAGCCGCGGACAGCTGGGCGAGCCGAGCCCGAGCCCAAGCGGGCCAAACCCGCATCAACCGAGCGGCCATGTCTCCCGCACACACAGCCTCCGACCCGGATACGGAAACCGGCGCTGCGCTTTACTGTCGGAGGTCAATAAAGCGGGTATGAAATGGTCGATTGCAGTTTTGTGAAAAGCTGGCGATGGGGCGGTAGGGTCAGCACGGTGCTCTGTACTGACCTAGAAAAGAtggtaaatcacaattacagcACACATGGCCGCTGAAATGAGTCCCGTCTTTCCACTCCGTTCCCAATGTTTCAGAACCggctgctgccctctagaggaaACACGGGACAGCGTCTCTATTGAGCGGCTGCACAACCTGTCCCGGGACCAGGTCCGACTGAGTCTC

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0005746 mitochondrial respirasome cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0070469 respirasome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72912 lncRNA upstream 6321 43921474 ~ 43926631 (+) True G58319
TU72908 lncRNA upstream 17192 43909588 ~ 43915760 (+) True G58317
TU72891 lncRNA upstream 57229 43873781 ~ 43875723 (+) True G58304
TU72871 lncRNA upstream 251999 43678351 ~ 43680953 (+) True G58291
TU72836 lncRNA upstream 488635 43439399 ~ 43444317 (+) False AMCG00009647
TU73083 lncRNA downstream 233723 44169485 ~ 44169789 (+) True G58467
TU73142 lncRNA downstream 389389 44325151 ~ 44325573 (+) True G58510
TU73145 lncRNA downstream 392509 44328271 ~ 44360062 (+) True G58513
TU73158 lncRNA downstream 450735 44386497 ~ 44390082 (+) True G58522
TU73159 lncRNA downstream 450735 44386497 ~ 44407568 (+) False G58522
AMCG00009660 mRNA upstream 30187 43897866 ~ 43902765 (+) True AMCG00009660
AMCG00009662 mRNA upstream 42481 43880029 ~ 43890471 (+) True AMCG00009662
AMCG00009659 mRNA upstream 59248 43859081 ~ 43873704 (+) True AMCG00009659
AMCG00009658 mRNA upstream 80423 43834883 ~ 43852529 (+) True AMCG00009658
AMCG00009655 mRNA upstream 176593 43751483 ~ 43756359 (+) True AMCG00009655
AMCG00009661 mRNA downstream 4531 43940293 ~ 43951629 (+) True AMCG00009661
AMCG00009670 mRNA downstream 42830 43978592 ~ 43992050 (+) True AMCG00009670
AMCG00009668 mRNA downstream 71152 44006914 ~ 44013300 (+) True AMCG00009668
AMCG00009667 mRNA downstream 77964 44013726 ~ 44022254 (+) True AMCG00009667
AMCG00009669 mRNA downstream 89782 44025544 ~ 44051535 (+) True AMCG00009669
TU72303 other upstream 1854711 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 2938293 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 3828004 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 3983752 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 4495957 39434900 ~ 39436995 (+) True AMCG00009480
TU73161 other downstream 450735 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 631603 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 648800 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 696988 44632750 ~ 44651967 (+) True G58600
TU73437 other downstream 1120303 45056065 ~ 45057874 (+) True G58747

Expression Profile