RNA id: AMCG00012887


Basic Information

Item Value
RNA id AMCG00012887
length 2643
RNA type mRNA
GC content 0.53
exon number 17
gene id AMCG00012887
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 11963359 ~ 12008431 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTGCACGGAAAGAAAACTGTGAGCGCTCCACTGAGCCCCGGAGATTTGCTTCGGATATCAAGCAGTGTGTCCGGCTCAGTGTGCATCCCAATAATATTTCAGTGTCGCAGTACAGTGTGCTCCTGATCCTGGAGGCTCACAATGTTCCTGAGCTCTCAGCTGGTGTAAACTGTACTTTTGAAGACTTGGCCGAGATGGATGGGCTGGTAGAAGGAAACAGGATAAAGTGCACCTCACCAGCGGAGAAAGAAGTGCCCCGCATCATCATAGACAAAGGAGACCATCAGATTGTTCAGCTCTACCTGAAGTCCAAGGAGACAGGGCTGGCCTTCGCCAACACAAGTTTTGTCTTTTACAACTGCAGCGTTCACAAATCCTGCCTGTCCTGTGTGCACAGCCCCTATCAGTGTCACTGGTGTAAATACAGGCACGTCTGCACCCACGACCCACGCTCCTGTTCCTTCCAAGAAGGGAGAGTCAAGCAGGCAGAGGAATGCCCCCAGCTGCTCCCCGCAGAGAAGATCCTCGTCCCAGTTGAAGTAGTGAAGCCCATCACTTTAAAGGCCAAAAACCTGCCCCAACCCCAGTCCGGCCAGCGAGGTTACGAGTGCGTCCTCAACATCCAGGGGACGGAGCAGAGGGTGCCAGCTCTGCGCTTCAATAGCTCCAGTGTCCAGTGCCAGAACACCTCTTACTTCTATGAAGGGATGGAGATTAACAGCCTCCCAGTAGAGCTCATGGTAGTGTGGAATGGTGACTTCAGCATCGACAATCCAGCAGATAACAAAGTGCACCTGTATAAATGTGGCGCCAGGCGGCAGAGCTGTGGCCTGTGTCTGAAGGCGGACCCACAGTTCGGCTGTGTGTGGTGTAAAGGGGAGGACAAGTGCACACTGAAACAGCACTGCCTACAACCAGAGAACCAGTGGCTCGAGCACTCGGGCCTCAACAGCAAATGCACCCACCCCAAAATAACCCAGATAACTCCTCTAAGAGGTCCAAGGGAAGGCGGCACACGGGTGACCATACGAGGGGAGAACCTTGGCCTGGAGTTCAGGGAGATAGAGGGACATGTCAAGGTGGCTGAGGTGGATTGTACACCAGTACCAGAGGGTTACATCCCAGCAGAGCAGATAGTGTGTGAGATGGGGAAGGCGGAGAAAAGCCAGTATGCTGGGAGTGTGGAGGTCTGCGTAGGAGAGTGCAGACCTGAATTCATGGCTACGTCctataaatattatttctttGTGGTTCCCAAGCTCCTGCACTTGAAACCTAGCCGTGGGCCCGTGTCAGGTGGCACCATTGTGAACATCACAGGAAGCAATCTTGATGCAGGAAGTAATGTATCCATCACCTTCAAGGACCAGAAGTGTATTTATCAAAGAAGGGGAGGTCAGTGGATCACGTGCAGGTCCCTGCCTTCTCTACATGGCATTGGgaatgtcagtgtgtctgtcagtgtggaCCGGGCTGGCCTCCAGAAAGACCTGAGATTTGAATATGTGGAGGATCCCACAGTCACAAAGATAGAGCCAGAATGGAGCATATTCAGTGGAAATACACCAATAACCGTGATGGGAACCAATCTGGACATCATTCAAAACCCTCATATCCGAGCAAAGTACAATGGACTGGAGACTGTCAATACGTGCAAAGTGCTCAGCTCAACATCAATGGTCTGCCAGGCGCCCGAGTTGGCCGTGAGCCCGACCCGGCAGAGTGAGGCCGTGGAGCGTCCAGACGAGTTTGGCTTCATCCTTGACAACGTCCAGTCAGTGCTGTCCTTGAACAACACCAACTTCATCTATTACCCCAATCCCATCTTTGAGACTTTGAGCTTCTCTGGGGTGCTGGAGCTAAAGCCTGGCTCACCAATCATACTGAAGGGCAGAAACTTTGTCCCGCCAGCCCCGGGGGGCAATGCCAAGCTGAACTACACTGTGCTCATCGGAGAGAAGCCCTGCACTTTGACAGTGTCTGACACACAGCTGCTGTGCGAGTCCCCCAACCTCACAGGGCGGCACAAGGTTCTGGCGCGGGTTGGTGGGATCGAGTTCTCCCCTGGCGTGGTGCACATCTCCTCGGACAGCCCCCTCAGCCACACCGCCATCATCAGCATTGCCAGCGCGGGGGGGCTGCTCATCTTCTTCATCGTGGTGGTCCTCATCGCATATAAGCGCAAGTCCCGGGAGAGCGACCTCACTCTCAAGCGGCTGCAGATGCAGATGGACAACCTGGAGTCACGCACTGATATTCATGAGCTGACCAGCGACCTGGATGGAGCCGGGATTCCCTTCCTGGATTATCGGACCTACACCATGAGGGTCCTTTTCCCTGGCATTGAAGAGCATCCTGTTCTGAGGGACCTAGAGGTTCCCGGATACCGACAGGAGCAGGTGGAAAAGGGACTGAAACTGTTTGGGCAGCTCATCAACAACAAGGTGTTTCTGTTGTCATTCATCCGCACTCTGGAGTCCCAACGCAGTTTCTCCATGAGGGACCGGGGGAATGTTGCCTCACTGATCATGACAGTTCTGCAGAGTAAACTGGAATACGCTACAGATGTGCTGAAGCAACTGCTGTCAGACCTCATTGACAAGAACCTGGAGAGTAAGAACCATCCCAAACTGCTGCTGAGA

Function

GO:

id name namespace
GO:0001763 morphogenesis of a branching structure biological_process
GO:0007411 axon guidance biological_process
GO:0007414 axonal defasciculation biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50542 lncRNA upstream 218564 11744596 ~ 11744795 (+) True G40555
TU50468 lncRNA upstream 495141 11466221 ~ 11468218 (+) True G40497
TU50469 lncRNA upstream 558003 11405005 ~ 11405356 (+) True G40498
TU50464 lncRNA upstream 609000 11324623 ~ 11354359 (+) False G40496
TU50562 lncRNA downstream 186054 12194485 ~ 12194686 (+) True G40571
TU50602 lncRNA downstream 342419 12350850 ~ 12351728 (+) True G40604
TU50632 lncRNA downstream 448117 12456548 ~ 12457730 (+) False AMCG00012894
TU50641 lncRNA downstream 483118 12491549 ~ 12500402 (+) False AMCG00012894
TU50655 lncRNA downstream 513032 12521463 ~ 12521819 (+) True G40643
AMCG00012883 mRNA upstream 171813 11785938 ~ 11791546 (+) True AMCG00012883
AMCG00012884 mRNA upstream 193091 11632372 ~ 11770268 (+) True AMCG00012884
AMCG00012876 mRNA upstream 529840 11429966 ~ 11433519 (+) True AMCG00012876
AMCG00012870 mRNA upstream 714418 11243425 ~ 11248941 (+) True AMCG00012870
AMCG00012871 mRNA upstream 730497 11212022 ~ 11232862 (+) True AMCG00012871
AMCG00012886 mRNA downstream 13035 12021466 ~ 12053113 (+) True AMCG00012886
AMCG00012885 mRNA downstream 226936 12235367 ~ 12242214 (+) True AMCG00012885
AMCG00012892 mRNA downstream 374627 12383058 ~ 12392105 (+) True AMCG00012892
AMCG00012894 mRNA downstream 444808 12453239 ~ 12497997 (+) True AMCG00012894
AMCG00012893 mRNA downstream 500553 12508984 ~ 12514898 (+) True AMCG00012893
TU50138 other upstream 1518912 10436907 ~ 10444447 (+) True G40224
TU50139 other upstream 1518912 10436907 ~ 10444447 (+) False G40224
TU50140 other upstream 1518912 10436907 ~ 10444447 (+) False G40224
TU49939 other upstream 2850258 9112460 ~ 9113101 (+) False AMCG00012820
TU49527 other upstream 4127145 7835346 ~ 7836214 (+) True G39709
TU50630 other downstream 480144 12488575 ~ 12535929 (+) True G40629
TU50637 other downstream 481368 12489799 ~ 12490422 (+) False AMCG00012894
TU51090 other downstream 2419882 14428313 ~ 14433201 (+) True G40999
TU51114 other downstream 2519731 14528162 ~ 14529806 (+) False AMCG00012940
TU51166 other downstream 2623926 14632357 ~ 14633413 (+) True G41059

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00055574 True 8676 mRNA 0.46 31 NC_007115.7 15217929 ~ 15420452 (-)