RNA id: AMCG00014055


Basic Information

Item Value
RNA id AMCG00014055
length 747
RNA type mRNA
GC content 0.43
exon number 2
gene id AMCG00014055
representative True

Chromosome Information

Item Value
chromosome id PESF01000031.1
NCBI id PESF01000031.1
chromosome length 187035
location 159996 ~ 180569 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTCCCTGATTACATGCATTGTGTGTTGCTGGGGGTTTGCCAGAAAATAGCCACTTTATGGTTTGATTCCAAAAGCTATAGTAAACCATGGTATATTGATTTGAACACTGCAACAGTGGATGTAAATCTTTTAGCAATCAAGCCTCCAAGCATTTTTTCCAGAATCCCACGGTCTATTGTTGAGCGAAGGTTTTGGAAATCTCACGAATGGCAGAACTGGCTTTTATATTACAGTTTGCCAGTCCTGAAGGGGATACTTCCAAACAAGTATCTTTGCCACTGGGCTCTACTTGTGGAGGGTGTGAGCATTTTGCTAGGTTCAGACATTAGCCAAGAGGATATTGACCATGCTCATGAGGCTCTTGAGCTTTATGTTAAATCAGTTCAGTCTTTGTATGGCAAAGATCAGATGACCTACAATATGCATTCACTTCTGCATTTGATTAAGAGTGTTGAGAATTTGTGTCCTCTCTGGGCCCAGTCTGCTTTCATGTTTGAGAGCTATAATGGCTACTTGCTCAAGCAAGTCAAAAGCAGTAATGCAGTGCCTCAGCAGCTTTGCAAAAGAGTAGCATGGTCTCGGGCATTGCCACGCATAGCTAAGGCCTGCTCATCCAATGATGTCTCACCTGAAATGAAATCATTCTACACAGAAATGACCTCTGGAGCAACGTTGCAAAAGTGGTCTCATGTGGTGCCCTCCAGCATTGGTGCAGCCATCAATGGCAAATTTACTGAAATTAGa

Function

GO:

id name namespace
GO:0016458 gene silencing biological_process
GO:0031047 gene silencing by RNA biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204043 lncRNA upstream 42137 117451 ~ 117859 (+) True G162042
TU204042 lncRNA upstream 46119 113671 ~ 113877 (+) True G162041
TU204037 lncRNA upstream 62702 97049 ~ 97294 (+) True G162036
TU204035 lncRNA upstream 66908 92675 ~ 93088 (+) True G162034
AMCG00014056 mRNA upstream 55 27913 ~ 159941 (+) True AMCG00014056

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU466818 True 1651 TUCP 0.44 3 CI01000299 5371181 ~ 5373579 (+)