Fish Transcriptome and Expression Database

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ecological fish

RNA id: TU204037

Basic Information

Item	Value
RNA id	TU204037
length	246
lncRNA type	intronic
GC content	0.49
exon number	1
gene id	G162036
representative	True

Chromosome Information

Item	Value
chromosome id	PESF01000031.1
NCBI id	PESF01000031.1
chromosome length	187035
location	97049 ~ 97294 (+)
genome version	AmiCal1_2021_bowfin_Genome
species	bowfin (Amia calva)

Sequence

GACACCCAGATAAGAACTTCATAGAATGTATACAGAatatcatttagagatgttaCTGATTGACGTTACTCAGACAGGGTAGAAGTGCCTGACCGCTGGATTTGTACAGGTTTTCTGGTGATAAATTCTCAGTCATTAGGgggtctgttttgtgttgttgccGCTCCTGCAAACCCCCCCGCGGTGCTGAGAGCAGGACGTGCTGCTTGCGAAGCCCCTCCACTGCAGTGTGATCCTGTCAGGGCA

Function

GO: NA

KEGG:

id	description
ko04142	Lysosome

JBrowse2

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

RNA id	RNA type	direction	distance	location	representative	gene id
TU204035	lncRNA	upstream	3961	92675 ~ 93088 (+)	True	G162034
TU204042	lncRNA	downstream	16377	113671 ~ 113877 (+)	True	G162041
TU204043	lncRNA	downstream	20157	117451 ~ 117859 (+)	True	G162042
TU204055	lncRNA	downstream	73094	170388 ~ 170637 (+)	True	G162054
AMCG00014055	mRNA	downstream	62702	159996 ~ 180569 (+)	True	AMCG00014055
TU204050	other	downstream	62492	159786 ~ 160627 (+)	True	G162049

Expression Profile