RNA id: TU84663



Basic Information


Item Value
RNA id TU84663
length 891
RNA type TUCP
GC content 0.65
exon number 3
gene id AMCG00014104
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 1835432 ~ 1838125 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


caacaacaacccgcGGACGTGCTGGTCGTGCCGGGCGGCCGGGCTGGGGGTCGTGACGGCGGGGGCGGCGCAGGACGGTCATTGAGAAAGTGCGGCTCCTCGAGTCAGCgctggaggaggagcagagcaggaggaggagaagaggaggagaggaggagggctGGAAAGAGTGAGAGACAAAGAGCAGGACGACGGGCGCTACACGTGGGGCGGCCAGTCTGAGGCGCTCCGGACAGCAGCTCCGTGTCTCTGCTCTCGGCAGCACCTTTGCGTCGCTTTCCTGCGCTGTGTCCAGCCCGGACGGAGATGCTTCCAGGCGGCTGCTGAGGCTCGGACCCGGGGCCGGGTGCTGTGAGAAGAGTTTGCCAGTCGTGGTCGCCGGAGAGCCGGGGGTCCAGATGGACGGAGTCGGGACCGGACGCGCACTGCCCTCCCTGCGGCTGCTGCGGGACTCGCTGCTGCTGTGCCTGCTGGCCGGCCGCGGGGGTGCTGAGTGCTCGGGCTGTGTGGAGTACTGCTGTGACGGCTCTCCGCCCTTCTGCTGCTCCTACTACGCCTACGTGGGGGATGTGCTCTCgggCACAGCGATCGCAGGGATCGTGTTCGGTGTGGTGTTCCTGATGGGCGCCGTGGCCGGCGTGTTCCTGTGcatctgcatgtgtgtgaagaGCGGCCGCGGCGCCCGTGTGGGCGTGTTCAGAGCCACGCACCTCAACACCATCACTCAGGGATACCCAGGtgagccccccacccccgctgTAGTAACAGCCTGAGGCAGTCACTGGTCCCGAACACAGtgcagtccagcagggtctcggccctggtcctgagagagaCAGTCCAGTCCAATAGTATAAATACCTAAATAATGTTTTCCTTAGTGTTCAGAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU84655 lncRNA upstream 13674 1820573 ~ 1821758 (+) True G67792
TU84544 lncRNA upstream 559216 1275991 ~ 1276216 (+) True G67699
TU84543 lncRNA upstream 585118 1250099 ~ 1250314 (+) True G67698
TU84535 lncRNA upstream 812619 981839 ~ 1022813 (+) True G67690
TU84529 lncRNA upstream 1030686 804537 ~ 804746 (+) True G67685
TU84650 lncRNA downstream 2040 1840165 ~ 1842445 (+) True G67789
TU84797 lncRNA downstream 239178 2077303 ~ 2077602 (+) True G67882
TU84819 lncRNA downstream 310324 2148449 ~ 2148654 (+) True G67899
TU84829 lncRNA downstream 495366 2333491 ~ 2333944 (+) True G67907
TU84830 lncRNA downstream 512004 2350129 ~ 2373305 (+) True G67908
AMCG00014101 mRNA upstream 2072 1825855 ~ 1833360 (+) True AMCG00014101
AMCG00014100 mRNA upstream 22134 1799682 ~ 1813298 (+) True AMCG00014100
AMCG00014095 mRNA upstream 270858 1545327 ~ 1564574 (+) True AMCG00014095
AMCG00014096 mRNA upstream 290207 1541410 ~ 1545225 (+) True AMCG00014096
AMCG00014099 mRNA upstream 337828 1479919 ~ 1497604 (+) True AMCG00014099
AMCG00014102 mRNA downstream 20553 1858678 ~ 1869442 (+) True AMCG00014102
AMCG00014103 mRNA downstream 34624 1872749 ~ 1878960 (+) True AMCG00014103
AMCG00014111 mRNA downstream 62337 1900462 ~ 1902687 (+) False AMCG00014111
AMCG00014106 mRNA downstream 83214 1921339 ~ 1925062 (+) True AMCG00014106
AMCG00014112 mRNA downstream 170477 2008602 ~ 2022266 (+) True AMCG00014112
TU84560 other upstream 351339 1483785 ~ 1484093 (+) False AMCG00014099
TU84388 other upstream 1728310 58449 ~ 107122 (+) True G67577
TU84672 other downstream 40966 1879091 ~ 1881041 (+) True G67801
TU84682 other downstream 62095 1900220 ~ 1902615 (+) True AMCG00014111
TU84815 other downstream 288747 2126872 ~ 2130145 (+) True G67896
TU84895 other downstream 868715 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other downstream 868715 2706840 ~ 2710329 (+) False AMCG00014146

Expression Profile