RNA id: TU84716


Basic Information

Item Value
RNA id TU84716
length 2122
RNA type TUCP
GC content 0.54
exon number 6
gene id AMCG00014108
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 1879203 ~ 1885432 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGTTTAACCCTGTCTCCAGGGCAGACTCCGGGCAGTACCACTGTGAGGCCAACAACAGGGTGGGGGAGCCCAAGAGCTGCATCGGCAAATACATGCAGATTGATGACCTGAACGTGGCTGGCATCGTGGCcgcggtggtggtggtgctcCTGGTGGTGTCGCTGTGTGGGCTGGGCATCTGCTACGCCCACCGCCAGGGCTACTttcacaaggGGCATCGTGGAAGGTCATTCTGGATCCCACAGTGCCATGGCGCCGCTCACATCAGCAGCCAGAATCTGCACAGGACTGACGACacCGCCGGGGCCCCCTACAGCAGCGCCCCACAGGAAGACTTTAAACACACGCAGTCCTTCGTGCTGTGAGGAACCGGGCGCCCTGCCTGGCTCTGCTGGGGCCCATTGGACTGGACATCCTGCCCACACCACTGACCATCCAGACTAGACACCCTGCCCGCACCAACTGGAACCAACTGGACAGGACAGTGCAATCAGAACACTGCCACGCTAGACTGGACAATAGGATCAAACCACAGCTCCACTGGAGTGGACTTGACCCAATAATTAAACCCCTCGCtaggctgggctgggctgtgggAGCTGCGCAGTCTGCTTTGCACCAGGACcccctgtgtgtgagtgtgtcagtgtggacaggggtgcatgtgcgtgtgcgtgtaagtatgtatgtatgtaataggGCTCATCATGTACGTGTGCTCGCTACAGGTGATGTAACCCCTCTGTAGATCAGTAAAGCCTCCCGTGTCGCGAAACCTGGGTCCAGTTGCATAAACTtagactaagtctttgtcttacTGGTCAGTAacgcaaagcattctgggaattttaagaccGTAAAACTAAACATGGCGCTTCTCTAAAACTGACAATCCCAGTCATTTCACAGTAACAGAAAATCTGTGCTTGTTATATAATGTAGAGAGGTATATACTCAAACACAAGGCGTGGGATAAAATAATGAAGGGAAACGTGTGCGTGGCCTGTAAAACACGGGCAGAAACGACAGAATCTCCTCGTACTGGAGGAGGACCGCCCTCAAAACGTACAGGCCACAGGATTGGGTATTGAAGTCTGTGGGGCGGAGTCTCATGTTTTGGGGGATCGCTGGTGGGCGGGACGGGGGCTGGTGTGAACCAATGGGAGGCTCTGCCCCTCAGCATCAGTGACTGTCGCTGTAGTCTCAGGCCAGCAGATTCAATGGAAAGTTGGACACATTTTAAGTCagcctgggggtgaggaggcGGACTTTTCAGGCCAAGTCTTAGTCTTAATTTTACacaactgactaacttgcattagactggtctgtcaaattaagaccagtctgatatagttttatgcaaccggccccatGTCTTTTGGCGCAGCGGGCTCATCCGTGCGGTGTGGAATCCTGAGCTCCAAACCGCACcggatatgtgtgtgtgagagtgtcagtgtagacagggctgtgtgtgagagtgtcagtggagacagggctgtgtgtgagtgtcagtggaGACAGGGCTGTGCCAGTGTGAGAGTGTCAGTGGAGACAGGGTTGTCCTGTCCACCACTCCTCCCTCGAGGGACAAGCAGGGATCAGGCAGCGCTGAAACCCGCTCCGCTCTGAGTGCAGTaccacaaacacagaaaggGGTGGACTTGTCGACAGGCTTCTCATAAGACGCGTGTGTTTCTAACAGCGCCTCACTGCGTTCCTTGTGTGGCCGAGGTGCGGCCACTGTGCTCGCACTGCGAACTGGAATCATACGGATCGCTGGCTTGTTCGTTTGTTTTTGCACAGAAGCTGTATTTTGTGGCATCAgtattaaaacatgcttttcttaCCCACACTGGTGCCTTATTGGGGTCTCCGTGCTCAGCTGCACATGGCGCTGGCCtcgcacacacaacacacacagacagacgcacacaacaCACGATGACTCCCTCCTCCGGAAGAGCAGCCACACGCTTTGCAGAACTTGCAGcttttgaagcctttgattgAATGAACAGTCGCAGCACCCTCTGTCATTTTCCCTTTAAAGCTGCACTCATTTCTTCTAAGAGTTAAGTCTCACTGCAGGGCTGCCCCTCTTCTTCTGAGCtcgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84693 lncRNA downstream 57444 1820612 ~ 1821759 (-) False G67818
TU84694 lncRNA downstream 57444 1820612 ~ 1821759 (-) True G67818
TU84597 lncRNA downstream 312863 1564787 ~ 1566340 (-) False AMCG00014098
TU84536 lncRNA downstream 781224 1097656 ~ 1097979 (-) True G67691
TU84530 lncRNA downstream 1007576 871053 ~ 871627 (-) True G67686
TU84744 lncRNA upstream 59077 1942027 ~ 1942420 (-) True G67849
TU84795 lncRNA upstream 173899 2056849 ~ 2059491 (-) True G67881
TU84803 lncRNA upstream 203161 2086111 ~ 2087121 (-) False AMCG00014119
TU84811 lncRNA upstream 212117 2095067 ~ 2124907 (-) False AMCG00014119
TU84810 lncRNA upstream 212356 2095306 ~ 2095631 (-) False AMCG00014119
AMCG00014105 mRNA downstream 5781 1870237 ~ 1873422 (-) True AMCG00014105
AMCG00014098 mRNA downstream 309274 1564778 ~ 1569929 (-) True AMCG00014098
AMCG00014097 mRNA downstream 340998 1537057 ~ 1538205 (-) True AMCG00014097
AMCG00014090 mRNA downstream 424586 1453775 ~ 1454617 (-) True AMCG00014090
AMCG00014091 mRNA downstream 466356 1391356 ~ 1412847 (-) True AMCG00014091
AMCG00014109 mRNA upstream 12715 1895665 ~ 1898909 (-) True AMCG00014109
AMCG00014107 mRNA upstream 20466 1903416 ~ 1903733 (-) True AMCG00014107
AMCG00014110 mRNA upstream 23200 1906150 ~ 1915590 (-) True AMCG00014110
AMCG00014115 mRNA upstream 146640 2029590 ~ 2031527 (-) True AMCG00014115
AMCG00014117 mRNA upstream 149291 2032241 ~ 2032429 (-) True AMCG00014117
TU84711 other downstream 8049 1869850 ~ 1871154 (-) False AMCG00014105
TU84686 other downstream 9755 1801662 ~ 1869448 (-) False G67813
TU84719 other upstream 9113 1892063 ~ 1892553 (-) True G67835
TU84714 other upstream 17690 1900640 ~ 1902615 (-) True G67832
TU84738 other upstream 33777 1916727 ~ 1918182 (-) True G67843
TU84851 other upstream 657367 2540317 ~ 2542697 (-) False AMCG00014134
TU84998 other upstream 758109 2641059 ~ 2643907 (-) False AMCG00014144

Expression Profile