RNA id: TU84682



Basic Information


Item Value
RNA id TU84682
length 926
RNA type TUCP
GC content 0.63
exon number 2
gene id AMCG00014111
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 1900220 ~ 1902687 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGTGCGGTGTGCGGTGTGCTGACACCGCGGTGTGTTAATGGGGTGTCGCTGTGCGGGTGTGGGGGGCGTGCGGCCCGGCTTGTCTCGCTGTATAATGACGAGTGCCCGGCTGTGCGGTACACCTGGCGCACCGAGCACCGCCCGCTGCTGGGGACCGGGGACCGGGGACCGGGGACCGGGGACTGGGGACTGGGCGGACGGGTAGCTCACTCCAGTGCGGTCGACCTTTCAAACCGCTCCGCATGCAGAGCCTGTGTGGAAGCGCTTTTCGTTCAGCAGCGGTCAGACAGGCCAGTGCGGTGACGTCACGCCGTGATTGACGGCTGCGTTGTTCCCTCTGCCGGCCCTGTGAGTGACACTGATAGGGGCCCCCTCGCCCCCAGCAGCTGCAgtgactgacactgacacactggacaGCTGCAGAGGGTTGTTGTGGCAGGAGTGCTGTGGATCGGGTGTCCCTGCTGACGCCTCGGTGCTGCTGTGTCCGCAGGCCCTGGACAACTTCCCCCTGCTGATGTACATCCTGGCCGCCAAGACGCTGCTGCTGTGCCTGGGCTTCGCCGGAGTCAAGCTCTACCAGAGCCGCAAGGCCGACGCGGAGCTGAAGAAGCGGGAGGAGCTGAAGAGGCGGGCCCGGGAGGCCCTGCTGGCCCAGCAGGAGGAGGacgagggagaggaagaggaagaggggaaCAAGAAGGAGGACTGAGGGCCAGGAGCAGCACAGgtggTGGAGTATCTGGCCGTGGGGGGTCCTCTCTGTGCTGGAGGGGCACTGTCTGTCGgcggacacacagacacgccaGGCGGGGAGCTGAACACGGACTGGCAGGAACCGCGGACACAGGAGAGCagcttttcatatatttatgacTTTTCTTTCCCTCCAACCTTTTGTAAATAAAGGTATTTTTTCAACAGTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU84650 lncRNA upstream 57775 1840165 ~ 1842445 (+) True G67789
TU84655 lncRNA upstream 78462 1820573 ~ 1821758 (+) True G67792
TU84544 lncRNA upstream 624004 1275991 ~ 1276216 (+) True G67699
TU84543 lncRNA upstream 649906 1250099 ~ 1250314 (+) True G67698
TU84535 lncRNA upstream 877407 981839 ~ 1022813 (+) True G67690
TU84797 lncRNA downstream 174688 2077303 ~ 2077602 (+) True G67882
TU84819 lncRNA downstream 245834 2148449 ~ 2148654 (+) True G67899
TU84829 lncRNA downstream 430876 2333491 ~ 2333944 (+) True G67907
TU84830 lncRNA downstream 447514 2350129 ~ 2373305 (+) True G67908
TU84919 lncRNA downstream 843629 2746244 ~ 2755484 (+) True G67983
AMCG00014103 mRNA upstream 21260 1872749 ~ 1878960 (+) True AMCG00014103
AMCG00014102 mRNA upstream 30778 1858678 ~ 1869442 (+) True AMCG00014102
AMCG00014104 mRNA upstream 62213 1835830 ~ 1838007 (+) False AMCG00014104
AMCG00014101 mRNA upstream 66860 1825855 ~ 1833360 (+) True AMCG00014101
AMCG00014100 mRNA upstream 86922 1799682 ~ 1813298 (+) True AMCG00014100
AMCG00014106 mRNA downstream 18724 1921339 ~ 1925062 (+) True AMCG00014106
AMCG00014112 mRNA downstream 105987 2008602 ~ 2022266 (+) True AMCG00014112
AMCG00014113 mRNA downstream 121983 2024598 ~ 2028511 (+) True AMCG00014113
AMCG00014120 mRNA downstream 180811 2083426 ~ 2113366 (+) True AMCG00014120
AMCG00014124 mRNA downstream 259142 2161757 ~ 2172540 (+) True AMCG00014124
TU84672 other upstream 19179 1879091 ~ 1881041 (+) True G67801
TU84663 other upstream 62095 1835432 ~ 1838125 (+) True AMCG00014104
TU84560 other upstream 416127 1483785 ~ 1484093 (+) False AMCG00014099
TU84388 other upstream 1793098 58449 ~ 107122 (+) True G67577
TU84815 other downstream 224257 2126872 ~ 2130145 (+) True G67896
TU84895 other downstream 804225 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other downstream 804225 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other downstream 804225 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other downstream 806409 2709024 ~ 2710329 (+) True AMCG00014146

Expression Profile