RNA id: TU84810


Basic Information

Item Value
RNA id TU84810
length 268
lncRNA type sense_over
GC content 0.55
exon number 2
gene id AMCG00014119
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 2085941 ~ 2124953 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGTCTCTGCATCACCTCTCTCTGCTGTGCTTTCAGAAGCAGCTTCTGGACGTCCTCCTCACAGTGACCAACACTGCAGCCCTGCCCACggcacagacacagagtcacAGGTACACAGCcctctgcacacagacacagagtcacAGGTACACAGTCCTCTGcccacagacacagagtcacagGTACACAGTcctctgcacacagacacagagtcacAGGTACACAGTcctctgcacacagacacagagtcacAGGTACACAGTCCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84803 lncRNA downstream 8185 2086111 ~ 2087121 (-) False AMCG00014119
TU84795 lncRNA downstream 35815 2056849 ~ 2059491 (-) True G67881
TU84744 lncRNA downstream 152886 1942027 ~ 1942420 (-) True G67849
TU84715 lncRNA downstream 212356 1879203 ~ 1882950 (-) False AMCG00014108
TU84694 lncRNA downstream 273547 1820612 ~ 1821759 (-) True G67818
TU84833 lncRNA upstream 254494 2350125 ~ 2373329 (-) True G67911
TU84881 lncRNA upstream 512638 2608269 ~ 2608479 (-) True G67953
TU85010 lncRNA upstream 601177 2696808 ~ 2701159 (-) True G68057
TU85014 lncRNA upstream 612186 2707817 ~ 2710329 (-) True G68061
TU85029 lncRNA upstream 662854 2758485 ~ 2758840 (-) True G68070
AMCG00014116 mRNA downstream 49059 2038470 ~ 2046247 (-) True AMCG00014116
AMCG00014114 mRNA downstream 57485 2032712 ~ 2037821 (-) True AMCG00014114
AMCG00014117 mRNA downstream 62877 2032241 ~ 2032429 (-) True AMCG00014117
AMCG00014115 mRNA downstream 63779 2029590 ~ 2031527 (-) True AMCG00014115
AMCG00014110 mRNA downstream 179716 1906150 ~ 1915590 (-) True AMCG00014110
AMCG00014118 mRNA upstream 56254 2151885 ~ 2154746 (-) True AMCG00014118
AMCG00014133 mRNA upstream 81188 2176819 ~ 2177304 (-) True AMCG00014133
AMCG00014136 mRNA upstream 172886 2268517 ~ 2278983 (-) True AMCG00014136
AMCG00014138 mRNA upstream 229471 2325102 ~ 2339187 (-) True AMCG00014138
AMCG00014134 mRNA upstream 436323 2531954 ~ 2540358 (-) True AMCG00014134
TU84738 other downstream 177124 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 192691 1900640 ~ 1902615 (-) True G67832
TU84719 other downstream 202753 1892063 ~ 1892553 (-) True G67835
TU84716 other downstream 212356 1879203 ~ 1882950 (-) False AMCG00014108
TU84711 other downstream 224152 1869850 ~ 1871154 (-) False AMCG00014105
TU84851 other upstream 444686 2540317 ~ 2542697 (-) False AMCG00014134
TU84998 other upstream 545428 2641059 ~ 2643907 (-) False AMCG00014144
TU85055 other upstream 729931 2825562 ~ 2829144 (-) True G68088
TU86038 other upstream 5282457 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 5321967 7417598 ~ 7423291 (-) False AMCG00014278

Expression Profile