RNA id: TU84851


Basic Information

Item Value
RNA id TU84851
length 1369
RNA type TUCP
GC content 0.47
exon number 4
gene id AMCG00014134
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 2531954 ~ 2542697 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGactccaatttatttttatttacagacttacacaatgaaaaacaacagaaactaaAATGATGTTGCACAGTTAGACCAGCAGATGATGCTTCCTAGGGCAGAGGTCACAGCAGGGGATTAAACAAGCtgttaattcaaaatacatatacaaaaaatgaCTTGAATTCCAAAAGGTTAAACAATAATAAGACACAGGAGAAAATCCTGTGGCTTTCCCAGAGGGCTGTGTGGCTGCAGTGGGAGTGGGTGTGGGCCGCAGTGGGCAGGGGGGTGTCCCGTCTCTTGCCCTGCGTTCGGTCAGCCGCTGTAAGGGTAGGAGCAGATGAACGCCTGCCTCTGGGTGCACTCTGTGTCTCTCCACCAGCTGTTCCCTTGCTCCCATCTCCACGCAGAACTGTCTGTTGTTCAGGTTGTTGGGCTCGCCAGACATCCAGTCAGAGTAGCTCCAAAAGGACCCATCCAGCCACAAGAAGCGACCTTTTTAAAGTTATACGCGCCGATCCAGGTAGGGACTCGGTCCCCGCTGGACGCAATGACCAGGTTCATCAACTTTCCATGCAGGTCACGGTTGGTCACCGAGGCCAGGTGTCCCCCTGGGAAATTGTCACGGCAGAAGAACTCAGATTCGGGGACTGGGCCGGACTCAGCCACTGAGGAACACACACAATGCATGACTGTTATTGCTGCTCTACTTGTAAGGCGTAAAAGTAAAACAGTTGCagtaatggaaataataataataatatcctttTCATCCATCCAATTTCAATAACCACTTCTTCTGGTGCAGTTTCTCTGGGATTTGCTTTACAGTAATGATAATATTAGCAATATGTAATTATAGTACTAATCTTAGGGTTAGTGATTGATATAGAGATTGATACATGGATGTGCTGGATGTTGTATAATGGTGAGGCTGTGCTTGTTTGATTAGTATTGTCTAAGTGAGATGGATTGGATCAGACTAGTTGATTCATCAAGGAAGAACCAaactccctttctctctccttctcccccctCCACCCCGGCCTGTTCCCTGCCATCTCCTCACCCACAGCGATGTTGGAGACCTGCTCCTCTGCTTCCAGCAGGCTGTTGCTGGCTTCTTCTCTCAGTATGGGCAGCACTGGCTCGGACTCGGCGACTGGGCTGGATTGAGCCACTGAGGAACACAAACACCATGCATGACTGATATTGCTGCTCTCCTTGTTCTTATTGCTATATTCATAACATATTGCTATTAAGTGTGGCACGTGGGTTATGGAGGACAGGCTGAgaaggttaaaaaataattgagagaACAGATCAGAAAAGAAACCTGCAAAATGTTCCAGAACACAGTTGCATTGCAGGGCACACAGATAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84833 lncRNA downstream 166988 2350125 ~ 2373329 (-) True G67911
TU84811 lncRNA downstream 415410 2095067 ~ 2124907 (-) False AMCG00014119
TU84810 lncRNA downstream 444686 2095306 ~ 2095631 (-) False AMCG00014119
TU84803 lncRNA downstream 453196 2086111 ~ 2087121 (-) False AMCG00014119
TU84795 lncRNA downstream 480826 2056849 ~ 2059491 (-) True G67881
TU84881 lncRNA upstream 65572 2608269 ~ 2608479 (-) True G67953
TU85010 lncRNA upstream 154111 2696808 ~ 2701159 (-) True G68057
TU85014 lncRNA upstream 165120 2707817 ~ 2710329 (-) True G68061
TU85029 lncRNA upstream 215788 2758485 ~ 2758840 (-) True G68070
TU85032 lncRNA upstream 222493 2765190 ~ 2766174 (-) False G68073
AMCG00014138 mRNA downstream 201130 2325102 ~ 2339187 (-) True AMCG00014138
AMCG00014136 mRNA downstream 261334 2268517 ~ 2278983 (-) True AMCG00014136
AMCG00014133 mRNA downstream 363013 2176819 ~ 2177304 (-) True AMCG00014133
AMCG00014118 mRNA downstream 385571 2151885 ~ 2154746 (-) True AMCG00014118
AMCG00014119 mRNA downstream 415364 2085941 ~ 2124953 (-) True AMCG00014119
AMCG00014132 mRNA upstream 221 2542918 ~ 2548184 (-) True AMCG00014132
AMCG00014131 mRNA upstream 19836 2562533 ~ 2570391 (-) True AMCG00014131
AMCG00014141 mRNA upstream 31766 2574463 ~ 2576803 (-) True AMCG00014141
AMCG00014143 mRNA upstream 72558 2615255 ~ 2615530 (-) True AMCG00014143
AMCG00014145 mRNA upstream 88961 2631658 ~ 2635316 (-) True AMCG00014145
TU84738 other downstream 622135 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 637702 1900640 ~ 1902615 (-) True G67832
TU84719 other downstream 647764 1892063 ~ 1892553 (-) True G67835
TU84716 other downstream 657367 1879203 ~ 1882950 (-) False AMCG00014108
TU84711 other downstream 669163 1869850 ~ 1871154 (-) False AMCG00014105
TU84998 other upstream 98362 2641059 ~ 2643907 (-) False AMCG00014144
TU85055 other upstream 282865 2825562 ~ 2829144 (-) True G68088
TU86038 other upstream 4835391 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 4874901 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 5594634 8137331 ~ 8139126 (-) False AMCG00014297

Expression Profile