RNA id: TU84998


Basic Information

Item Value
RNA id TU84998
length 1135
RNA type TUCP
GC content 0.44
exon number 3
gene id AMCG00014144
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 2641059 ~ 2653247 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCTTTTCAACActcataatgtattttaaccCTTTCAAAACCAAGGTAGCTCATCCTATCATCTATGCATAAATAGCAAATTGGTCACTATAAAATACTATGGGCAAAATAATTTTGAAGCAATCAAGATGAGCTACCCGCAGGTAGCCCAGGTTTATGGGCGTGTTTTGAAATTGTTAATTGCGCACTTTCGTTAGGAAGCTAATTCTGTCCagtagctcagtttgtcagaacaccggcCCTTATCGGGTGATCTATGCAGCCGATCAGAAAGGATTTTTTCGATTGGCTAGATTGGCAGCTCTAGAAGTCATGTGTTATCTATAGTAACAGCTTCTCCATTGGGCAATGCCAGCCTCATTGCGTACGGGATgtctaaaaccaggaagtacgcgatgtaaacaaaccgcacatgGCTGTTTTCAGCGGAATCTCAGCTACACAGGGTTTGACGTCCCACAGAACAACAGGCATCTCAACAGCTCCATGCATAACCTGATCCACGATTACCTCAATGGAACCATTTCCCACGTTCCCATCGCTGCGAATGACCCCATATTCCTCGTACACCATGCCTTTGTTGACAAGATTCTAGAAATGTGGCTGGAGACCCATCAAGATGCTCACTATCCAAATGATACCAACATCCCTAAAGCACAGAGGCCAAACTCCTACATGACTGCTTTCTTCCCTCTGAGACACAATGACAATTACTTCAATTTGAAAGTGTTAGACCTGGGCTACTCCTATGAATAAAACCACACCCAGCAGTCAGTGATTTGACATCAGCTCAGCATTGAAATGGAATTAGGCTTGTGGCTCAGTGTACCATCCTGCCCCACTGATGGTTTGCACTATATATGAGTCTGTAGAGTAGGATCAGTAGCACAGTTAAATTACAGTGAGGCTGATAGAGGATACCGATAGTCTCCTTGCACCTTTTCATGACAACAGCAAATGCCAGCATGACATTGACCTACAATGAATAAAATCAGTTGCTCATGCCTTATGCCTCGTGTTCTCCCATTCTTATCCTGGCTCTGCAGTGCAGCATGTCACACTCACACTACAGATGTACGGCAGGGGTGGAAACGTAGCATAATCAGTGGGATGCAAGTCCCTTTTACCACAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84881 lncRNA downstream 32580 2608269 ~ 2608479 (-) True G67953
TU84833 lncRNA downstream 267730 2350125 ~ 2373329 (-) True G67911
TU84811 lncRNA downstream 516152 2095067 ~ 2124907 (-) False AMCG00014119
TU84810 lncRNA downstream 545428 2095306 ~ 2095631 (-) False AMCG00014119
TU84803 lncRNA downstream 553938 2086111 ~ 2087121 (-) False AMCG00014119
TU85010 lncRNA upstream 52901 2696808 ~ 2701159 (-) True G68057
TU85014 lncRNA upstream 63910 2707817 ~ 2710329 (-) True G68061
TU85029 lncRNA upstream 114578 2758485 ~ 2758840 (-) True G68070
TU85032 lncRNA upstream 121283 2765190 ~ 2766174 (-) False G68073
TU85033 lncRNA upstream 121283 2765190 ~ 2766174 (-) True G68073
AMCG00014145 mRNA downstream 5743 2631658 ~ 2635316 (-) True AMCG00014145
AMCG00014143 mRNA downstream 25529 2615255 ~ 2615530 (-) True AMCG00014143
AMCG00014141 mRNA downstream 64256 2574463 ~ 2576803 (-) True AMCG00014141
AMCG00014131 mRNA downstream 70668 2562533 ~ 2570391 (-) True AMCG00014131
AMCG00014132 mRNA downstream 92875 2542918 ~ 2548184 (-) True AMCG00014132
AMCG00014142 mRNA upstream 24074 2667981 ~ 2675410 (-) True AMCG00014142
AMCG00014150 mRNA upstream 87624 2731531 ~ 2734872 (-) True AMCG00014150
AMCG00014151 mRNA upstream 101438 2745345 ~ 2751995 (-) True AMCG00014151
AMCG00014155 mRNA upstream 206505 2850412 ~ 2868349 (-) True AMCG00014155
AMCG00014153 mRNA upstream 226554 2870461 ~ 2879884 (-) True AMCG00014153
TU84851 other downstream 98362 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 722877 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 738444 1900640 ~ 1902615 (-) True G67832
TU84719 other downstream 748506 1892063 ~ 1892553 (-) True G67835
TU84716 other downstream 758109 1879203 ~ 1882950 (-) False AMCG00014108
TU85055 other upstream 181655 2825562 ~ 2829144 (-) True G68088
TU86038 other upstream 4734181 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 4773691 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 5493424 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 5512322 8156229 ~ 8158590 (-) True AMCG00014298

Expression Profile