RNA id: AMCG00014145


Basic Information

Item Value
RNA id AMCG00014145
length 1134
RNA type mRNA
GC content 0.53
exon number 5
gene id AMCG00014145
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 2631658 ~ 2635316 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGATTGCTGCCATGGCTGTCTTTATTAGCcccgccgctgctgctgctgttcccagcgGCTCTGCAGGCTCAGTTCCCTCGTCTCTGTACCACACCTAAAGCCTTGAAGGAGCGCAAATGCTGTCCAAAGTGGCGGGGGTCTCCTTGTGGGATGCAGCTTGGCCGGGGAGCCTGTTATTCCTACcgtatgtttttctttagaaCTGCATACATAGACTACCGGGAGGACTGGCCCTATGCCTTCTATGACTCTGTATGCAAGTGCAATGGAAACTTTGATGGCTTTGACTGCAGCCAGTGCAAGCCTGGGTTCAAGGGCCCACGCTGTCAACAGACCTTTAGCGTTGTGAGGAAGGAGATCACTACAAAGCCGTACCGCAACTCTACGAGGAACGCTGCTCATGAGGGCCCAGCCTTCCCCTTCTGGCACAGAGTGTTCCTGCTGTTCATTGAGCGTGAGATCAGGGAGCTGACGGATGATGACTCCTTCTTCATCCCCTACTGGGACTGGACAAAGACTGACCACTGCAACCTCTGCACCAAGGGCTACTTTGGAGTGAGTGATGAAAATGGTCACATACGCAGAGAGTCCCCCCTCTCTAGGTGGAAGACCCTGTGCTCATATGACGATGACTCTCTTGGAATAATATGCCTACCACGTAACCGTAATGCACCGCTGCAGCCTATAATACGCAAACCAGGTAAAGATGTGAAATATCCGCTGCTGCCAACGGCCTCTGATGTCCGTTACACTCTGGCAGCTGAGAAGTTCGACACGCCTCCTTATGATGGAGGGGCCAAACTCAGCTTCAGGAGCAGGCTAGAGGGGTTTGAAGTCCCACAGGACAGCAGGCATCTCCTCTACTCCATGCACAACCTGGTCCACCTGTACTTGAATGGAACCATGTCTTCTGTTCCCATCTCTGCAAATGACCCCTTGTTCATGGTGCACCATGCCTTCATCGACATGATTCTAGAAGAGTGGCTGCAGGGCCATCCTGGAGCAGAATACCCCAGAGACGAGCGCATACCTTTAGCACAGAGGGCAGACTCCTACATGACTCCCTTCTTCCCTCTGAGACGCAATGATGACTACTTGCATAATTCAATGTCAGACCTGGGCTACTCCTAT

Function

GO: NA

KEGG:

id description
K00505 TYR; tyrosinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84881 lncRNA downstream 23179 2608269 ~ 2608479 (-) True G67953
TU84833 lncRNA downstream 258329 2350125 ~ 2373329 (-) True G67911
TU84811 lncRNA downstream 506751 2095067 ~ 2124907 (-) False AMCG00014119
TU84810 lncRNA downstream 536027 2095306 ~ 2095631 (-) False AMCG00014119
TU84803 lncRNA downstream 544537 2086111 ~ 2087121 (-) False AMCG00014119
TU85010 lncRNA upstream 61492 2696808 ~ 2701159 (-) True G68057
TU85014 lncRNA upstream 72501 2707817 ~ 2710329 (-) True G68061
TU85029 lncRNA upstream 123169 2758485 ~ 2758840 (-) True G68070
TU85032 lncRNA upstream 129874 2765190 ~ 2766174 (-) False G68073
TU85033 lncRNA upstream 129874 2765190 ~ 2766174 (-) True G68073
AMCG00014143 mRNA downstream 16128 2615255 ~ 2615530 (-) True AMCG00014143
AMCG00014141 mRNA downstream 54855 2574463 ~ 2576803 (-) True AMCG00014141
AMCG00014131 mRNA downstream 61267 2562533 ~ 2570391 (-) True AMCG00014131
AMCG00014132 mRNA downstream 83474 2542918 ~ 2548184 (-) True AMCG00014132
AMCG00014134 mRNA downstream 91300 2531954 ~ 2540358 (-) True AMCG00014134
AMCG00014144 mRNA upstream 5873 2641189 ~ 2653247 (-) True AMCG00014144
AMCG00014142 mRNA upstream 32665 2667981 ~ 2675410 (-) True AMCG00014142
AMCG00014150 mRNA upstream 96215 2731531 ~ 2734872 (-) True AMCG00014150
AMCG00014151 mRNA upstream 110029 2745345 ~ 2751995 (-) True AMCG00014151
AMCG00014155 mRNA upstream 215096 2850412 ~ 2868349 (-) True AMCG00014155
TU84851 other downstream 88961 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 713476 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 729043 1900640 ~ 1902615 (-) True G67832
TU84719 other downstream 739105 1892063 ~ 1892553 (-) True G67835
TU84716 other downstream 748708 1879203 ~ 1882950 (-) False AMCG00014108
TU84998 other upstream 5743 2641059 ~ 2643907 (-) False AMCG00014144
TU85055 other upstream 190246 2825562 ~ 2829144 (-) True G68088
TU86038 other upstream 4742772 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 4782282 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 5502015 8137331 ~ 8139126 (-) False AMCG00014297

Expression Profile