RNA id: TU84895


Basic Information

Item Value
RNA id TU84895
length 363
RNA type TUCP
GC content 0.57
exon number 4
gene id AMCG00014146
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 2706840 ~ 2710329 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCtccaaaacaatgcaaatgtacGGCAGaaaaGAGGTGATCGACCCTGAGATGACCGATTTTGAGCGCGGTCTCATCGTTGGTTACCAAGAAGGGGGGAAGTCTCTGGCGGAGATCGTGGAGATCACTGGTCTGCCCAAACGAGCGGTGAAGAAGTTCCTGAGGGACTGGAAGAAAGGAGCCATCGATgcCGACACCGGCATTTACAAGGACGCCATCGCCGCGGGGAGAGAGAGCGCCGACAGTGGCAGCGATGACTGACGTCCTGAGGGGGCTCTCGGACAGCGGCTCCGACGGCCGCCCCCCACAGGGGTTTGCTGTACCCAAGGACTGAGTAGCACTAATAAAGATTTTTTCAGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84830 lncRNA upstream 333535 2350129 ~ 2373305 (+) True G67908
TU84829 lncRNA upstream 372896 2333491 ~ 2333944 (+) True G67907
TU84819 lncRNA upstream 558186 2148449 ~ 2148654 (+) True G67899
TU84797 lncRNA upstream 629238 2077303 ~ 2077602 (+) True G67882
TU84650 lncRNA upstream 864395 1840165 ~ 1842445 (+) True G67789
TU84919 lncRNA downstream 35915 2746244 ~ 2755484 (+) True G67983
TU84927 lncRNA downstream 57173 2767502 ~ 2768837 (+) True G67988
TU84933 lncRNA downstream 72010 2782339 ~ 2802044 (+) True G67994
TU84941 lncRNA downstream 82413 2792742 ~ 2797809 (+) True G67997
TU84995 lncRNA downstream 265885 2976214 ~ 2976510 (+) True G68046
AMCG00014126 mRNA upstream 145663 2558599 ~ 2561177 (+) True AMCG00014126
AMCG00014130 mRNA upstream 150272 2549354 ~ 2556568 (+) True AMCG00014130
AMCG00014128 mRNA upstream 164442 2539703 ~ 2542398 (+) True AMCG00014128
AMCG00014137 mRNA upstream 209693 2486625 ~ 2497147 (+) True AMCG00014137
AMCG00014135 mRNA upstream 252284 2451049 ~ 2454556 (+) True AMCG00014135
AMCG00014147 mRNA downstream 65049 2775378 ~ 2778596 (+) True AMCG00014147
AMCG00014148 mRNA downstream 78266 2788595 ~ 2790836 (+) True AMCG00014148
AMCG00014149 mRNA downstream 109213 2819542 ~ 2821456 (+) True AMCG00014149
AMCG00014161 mRNA downstream 199100 2909429 ~ 2915164 (+) True AMCG00014161
AMCG00014152 mRNA downstream 213071 2923400 ~ 2928310 (+) True AMCG00014152
TU84815 other upstream 576695 2126872 ~ 2130145 (+) True G67896
TU84682 other upstream 804225 1900220 ~ 1902615 (+) True AMCG00014111
TU84672 other upstream 825799 1879091 ~ 1881041 (+) True G67801
TU84663 other upstream 868715 1835432 ~ 1838125 (+) True AMCG00014104
TU84560 other upstream 1222747 1483785 ~ 1484093 (+) False AMCG00014099
TU85565 other downstream 1938871 4649200 ~ 4651964 (+) True G68475
TU85567 other downstream 1938871 4649200 ~ 4651964 (+) False G68475
TU86015 other downstream 4635866 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 4703311 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 7292729 10003058 ~ 10008648 (+) True G69406

Expression Profile