RNA id: AMCG00014154


Basic Information

Item Value
RNA id AMCG00014154
length 1764
RNA type mRNA
GC content 0.54
exon number 10
gene id AMCG00014154
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 2893854 ~ 2904687 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTCTCCACGGCTGGGCCAAACGTGTCCCGGCGAGACAGGGGTGTCGATGAATCTGCGATGCTGGATGTGCTGATAATAGGGGGGGGCCCTCATGCTTTGACCCTGGCCTCGCTGTTAACCAATCCAGGTTGCCGAATACCGCAGCCCAGCTCTGGGGTTCTGGAAGGAGTTGTGTTCAGTAAGAGCTGGTGTAAGAAAGGGAAATCTAAACTCAGAGGAAGACCATCACCTGATGAGCTGTTAGAAACCTTGGACCTTCCCCCATGCCCTCAGTTGCAGTTGAAAGTGGTTGACACCTATGGACAATGGACAACCCTGTGGGAGAAACAGTTTGCAGCTCTGAATATACCTCATCTCCGCTCACATACCCTGGTGCACACAGATCCACTTAACAAGAAAGCCCTGcaggaatttgttttaaagcacgAGCGAACGAACGAACTACACACCCTGAAGGAACAAACTTACATTCAAGATGAAAACGCCTTCTTCAATGACAACCGTCTGGGCAAGAAGGACAAGAAGAAACTTACGTCCAATAGCACGTTAAGGAAAAGCTTGTATTTCAGCTTGCCAGGGACTAAACTCAGTGTGGACTTCTTCAGGGAGCAGGTTTACAGATACCACCTGGAAAGTGTCTTAATCAAAGGCACAGTGGAGAGAATTATGCCAGTCGTAGAGGCCCAGTCCCCACCGTTGCCAGCAGACAGCGAAGGCAAGAGGGCGCAGTACTTCAGAGTGGTGCTGCAGAGTGGAGAGGTGATCGAGACGAAGCAGGTGGTCCTGGCAACGGGTCCCACGCGGGCTCAGATGGCCAACATTCCCGCCTGGGTCAGTGCAATCAGTGAGAGCTACCCAGAGGACAGCCTGCAGCACACCGTGAACCTCCTGCACGGTCAGCATCCCACACAGCAACGGGAAGGAGAGGAACCGGGAATAAAGAGCAGAGTTCCAGTACCACCGTCAGTGTGTCGGAGAGGAGAGAGGCTGATGGTGATTGGAGGAGGCCTGACCAGTGCCCACATTATTTCCATGGCTCTGCAGCAGGGAGCCAGTCACGTGACCTGGGTCATGCGGAAACATTTACAGCTGAAGCAATTTGATGTGGGTGATGTTGAGACTCTAATCGGACGCTACTCCCACATTGAACACGGCATCAAATTGGACGGACTCGCCTATCTCCGCCAGTTTTATAACGAGAGGAGTCTGCACAAGCGTCTGGCAATGATTCACCAAGCCAGAAAGGGGGGTGCGGTCACTCCGGAGGCCTACGCGCAGCTGCAACCCTACATCGGCAGCAGACACTTAACGGTGAAAACCTACTGCCAGGTTTCCGAAGCAAAGTGGTCTTACCGGAATCAGGCATGGGACGTGTCTGTGAACACAAGTGAGAGGTGGTCTGGGGACCGAATCTGGCTAGCCACCGGCTGCAAACTCGATGTGAATCAAGATCCTTTACTCAGCGAAGTCATGAGAGAGTTCCCCATTCAGGTGCTTGATGGCTGGCCTTCAGTCTCTGAGAATCTGCAGTGGTCTCCTGGCTGCGCTCTCTACCTGATGGGGCAATATGCAGCACTTCAGATTGGGCCTCATTCTGTCAACCTGGCTGGAGGTCAGGCGGCCAGTGCACGCATTGCGAGAGACATCCTCAATAAACACAGTGAAGTGGGGGGAGGACAGGCGGCCCCCGACGGACAGGCTGCTGGGAAGTCACGGACGCAGGAGTACATACAGCAGATGCATGGGCTGATGTGGTTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85038 lncRNA downstream 88690 2776259 ~ 2805164 (-) True G68077
TU85041 lncRNA downstream 91810 2782510 ~ 2802044 (-) False G68078
TU85040 lncRNA downstream 108441 2782510 ~ 2785413 (-) True G68078
TU85037 lncRNA downstream 123194 2769838 ~ 2770660 (-) True G68076
TU85032 lncRNA downstream 127680 2765190 ~ 2766174 (-) False G68073
TU85111 lncRNA upstream 124422 3029109 ~ 3032764 (-) True G68124
TU85159 lncRNA upstream 322178 3226865 ~ 3228150 (-) True G68162
TU85184 lncRNA upstream 486301 3390988 ~ 3391380 (-) False AMCG00014181
TU85251 lncRNA upstream 558748 3463435 ~ 3464792 (-) True G68224
TU85344 lncRNA upstream 1052315 3957002 ~ 3957266 (-) True G68304
AMCG00014156 mRNA downstream 1632 2880514 ~ 2892222 (-) True AMCG00014156
AMCG00014153 mRNA downstream 13970 2870461 ~ 2879884 (-) True AMCG00014153
AMCG00014155 mRNA downstream 25505 2850412 ~ 2868349 (-) True AMCG00014155
AMCG00014151 mRNA downstream 141859 2745345 ~ 2751995 (-) True AMCG00014151
AMCG00014150 mRNA downstream 158982 2731531 ~ 2734872 (-) True AMCG00014150
AMCG00014157 mRNA upstream 25927 2930614 ~ 2935152 (-) True AMCG00014157
AMCG00014160 mRNA upstream 30918 2935605 ~ 2937871 (-) True AMCG00014160
AMCG00014159 mRNA upstream 33860 2938547 ~ 2940833 (-) True AMCG00014159
AMCG00014158 mRNA upstream 41215 2945902 ~ 2952055 (-) True AMCG00014158
AMCG00014169 mRNA upstream 280290 3184977 ~ 3195114 (-) True AMCG00014169
TU85055 other downstream 64710 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 249947 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 351157 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 975672 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 991239 1900640 ~ 1902615 (-) True G67832
TU86038 other upstream 4473401 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 4512911 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 5232644 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 5251542 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 5478598 8383285 ~ 8384224 (-) True G69156

Expression Profile