RNA id: AMCG00014155


Basic Information

Item Value
RNA id AMCG00014155
length 2754
RNA type mRNA
GC content 0.51
exon number 13
gene id AMCG00014155
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 2850412 ~ 2868349 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTCCAGAGACGAAGAGGGAGTCTGAAGGACACCCTGTCCACCAGGCACCCGCGTGGCACCCCTCTCAGTCTCCGAGGCGGCGCCCCACACAAGCACAACATCTGCATGGTGTCTGATTTCTTCTACCCCAACATGGGCGGCGTGGAGAGCCACATCTACCAGCTGTCCCAATGCTTGATTGAAAAGGGACACAAGGTCATCGTTGTGACCCATGCCTACGGAAACCGGAAAGGTGTCCGATACCTCACCAATGGACTCAAGGTGTACTACTTACCCCTGCAGGTGATGTACAACCAGTCCACGGCCACCACGTGTTTCCACAGTCTACCTCTGCTCAGGTGCATCTACATACGCGAGAGGATCACCGTCGTCCACTCGCACAGCTCCTTCTCCGCCATGGCCCACGACTCCCTGTTCCACGCCAAGACCATGGGCCTGAACACGGTGTTCACAGACCACTCCCTCTTCGGCTTCGCGGACGTGAGCTCGGTGCTGACCAACAAGCTGCTCACCGTGACGCtttgcgacaccaaccacatcATCTGTGTGTCGTTCACCAGCAAGGAGAACACCGTGCTGAGAGCCGCACTGGACCCCGAGATCGTGTCCGTCATCCCCAATGCTGTGGACCCCACCGACTTCACCCCGGACCCGGTTCGCCTTTTAGGAGCCTTGGAACACAAAGATGTTAGAAATGTTCTGGTTCAGGGTCATATCTTCCTCAACACATCCCTGACAGAAGCTTTCTGCATGGCTATTGTGGAGGGGGCCAGCTGTGGACTGCAGGTTGTCAGCACAAGAGTGGGCGGCATCCCGGAGGTGCTGCCCGAGGACCTGATCACGCTGTGTGAGCCCACGGTGAAGTCGCTCTGTGAAGGGCTGGAGACGGTCATCGCCAGGCAGAGGGCGGGGAGCGTGCCACCGCCAGCCGATATCCACGATAGAGTGCGGACTCTCTACACCTGGAGGAACGTTGCAGAGAGGACTGAAAAGGCACGacTTCTTGTGTATGACCGAGTGGCCAAAGACGTGGTGCTGCCCATGGACAAGCGGCTGCAGAGACTGATGGCGCACTGTGGGCCTGTGTGTGGCTCGATTTTTGCCTTTGTTGCCGTGCTGGACTTCCTGCTCCTGCTATTTTTAAGATGGCTTGTCCCTGACTCTGTTATTGACATCGCCGTTGATGGCTGCGGCCCTCGTGGACTCTTGATCAAGATAAGTCTTGCCTTGTTAACTCACTTCTACATCGTCCAAGGAAACCGGAAGGAGGCTGCCAGGATTGCAGAAGAGATCTATGGAATAACACCAGGCTCCTGGGCGGACAGATCCCCTCTTCACGAAGCTGCCTTCCAGGGTCGCCTCCTCTCCCTCAAGACCCTGATCGCACAGGGTTTTAATGTGAATATTGTTACCATTGACAGGGTGTCTCCGCTCCACGATGCCTGTCTCGGGGGACATGTTGCTTGTGCCAAGGTTTTGCTGGAAAATGGGGCCAATGTGAACTCGGTCACGATCGACGGCATCACTCCTCTGTACAACGCCTGCTGCAGCGGCAGTGCAGCCTGCGTCAACGTGCTTCTGGAGTACGGGCCGAGCCCGCAGGTGGACTGCCAGCTGGCATCGCCAATTCACGAAGCCACAAAACGAGGCCACAGAGAATGTATGGAGATTTTACTGACAAATGGAGTGAACATTGACCAAGAGCATCCTCAGATGGGGACCCCTCTTTATGTTGCCTGCACGTTTCAGAGGACGGACTGTGTGAGGAAGCTGCTGCAGCTAGGAGCGAATGTCCACCAGGGAAGACTCCAAGACACCCCTCTCCACGCGGCTGCCCGGAAATCCAGTGCCAACCTGGTGGAGATGCTGATCGATTACGGAGCAGATGTGAAAAGCAGAAACAGTGAGGGGAAGAGACCAGTGGAGTTGGCGGCACCAAACAGCACCGTGGAGAGAGCGCTGTTACTACGGGAAGGTCCCACCGCCCTGTCTCAGCTGTGCCGTCTCTGTATACGCAAATGCCTGGGGAGATCGCGGCTCCACCGAATGTCCAGCTTAGATCTCCCAGAGCGGCTAAAGGAATTTCTCCTCTACAGAATATGCCAGTCTTTCTGAGGATGAAAAGATGTCTTCATTATATGCACATAGTTGACTTCTTCCCCGGTTGCACTGAAGCCTGTTCATTATCATACATAAGACAGTAGGGTACAGCTTTTACTTTGATGTTCCttttcagaaaaaatacattatagtgatgcatgtttttcagtttattctgCTTTTACTGACATTTCAGCATAAATCAGGTTATTACACAGAACTTGCATGAAGTTAACATTTTATTGGTTAATGTGGTTTCACTCCAGATTCATTTTTAACGTAGCTTCCTAGCATATAGCTTTACAGCTCTGCAGAGTTCATATATGTCTCAAAAACACAAAGTTCACGTCAACAGCATTTGAACTGCACTACACTGCCTAATCCCAGATCACTGTTTCTGAAGAAGACAATTATGgttaaacaatgtaaataacTTTGTAAAATGAGCAATTACTGGCTTGTACTTGTACACATCTATGTCTATGTAGTGTTGTAATTGTTGAAGTACAACCAATTGTATTTCTACTCAGTTTAATTTTAGTCACCCTCACTGTACCTTTGTTACCTTTAGATGCTtttttgcataaaataatattattccaACTTGTGAGAATAAATCTAAGTAATAAACTTTAtttgaataaagaaaaa

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process

KEGG:

id description
K10333 ASB11; ankyrin repeat and SOCS box protein 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85038 lncRNA downstream 45248 2776259 ~ 2805164 (-) True G68077
TU85041 lncRNA downstream 48368 2782510 ~ 2802044 (-) False G68078
TU85040 lncRNA downstream 64999 2782510 ~ 2785413 (-) True G68078
TU85037 lncRNA downstream 79752 2769838 ~ 2770660 (-) True G68076
TU85032 lncRNA downstream 84238 2765190 ~ 2766174 (-) False G68073
TU85111 lncRNA upstream 160760 3029109 ~ 3032764 (-) True G68124
TU85159 lncRNA upstream 358516 3226865 ~ 3228150 (-) True G68162
TU85184 lncRNA upstream 522639 3390988 ~ 3391380 (-) False AMCG00014181
TU85251 lncRNA upstream 595086 3463435 ~ 3464792 (-) True G68224
TU85344 lncRNA upstream 1088653 3957002 ~ 3957266 (-) True G68304
AMCG00014151 mRNA downstream 98417 2745345 ~ 2751995 (-) True AMCG00014151
AMCG00014150 mRNA downstream 115540 2731531 ~ 2734872 (-) True AMCG00014150
AMCG00014142 mRNA downstream 175002 2667981 ~ 2675410 (-) True AMCG00014142
AMCG00014144 mRNA downstream 197165 2641189 ~ 2653247 (-) True AMCG00014144
AMCG00014145 mRNA downstream 215096 2631658 ~ 2635316 (-) True AMCG00014145
AMCG00014153 mRNA upstream 2112 2870461 ~ 2879884 (-) True AMCG00014153
AMCG00014156 mRNA upstream 12165 2880514 ~ 2892222 (-) True AMCG00014156
AMCG00014154 mRNA upstream 25505 2893854 ~ 2904687 (-) True AMCG00014154
AMCG00014157 mRNA upstream 62265 2930614 ~ 2935152 (-) True AMCG00014157
AMCG00014160 mRNA upstream 67256 2935605 ~ 2937871 (-) True AMCG00014160
TU85055 other downstream 21268 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 206505 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 307715 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 932230 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 947797 1900640 ~ 1902615 (-) True G67832
TU86038 other upstream 4509739 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 4549249 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 5268982 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 5287880 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 5514936 8383285 ~ 8384224 (-) True G69156

Expression Profile