RNA id: AMCG00014156


Basic Information

Item Value
RNA id AMCG00014156
length 1484
RNA type mRNA
GC content 0.43
exon number 10
gene id AMCG00014156
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 2880514 ~ 2892222 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cttacatttcaaatgatgcAATTAACAAGTAAAGACATGTTACATGTGTATTTAGTTGGAGCTGACTCAGTGGGTTTCTTTTGTAATCACTGAATGACATCCATTTGTCCTTTTTAAAGgtacatgtgtgtgtcagtgtaaaGACTCTGGAAAAGCCTTTCgttttaactgtatatttcagaAAGCAAACTATAACCTGCAGATATAAAAGAGGGggcagagaaaagagaaagatgCGCAGGGCGGTGCAGACGGTGCTGAGTGTGGAGCAGGCGGAGGGCGTCGGGGCCCGAGTGCGCAGAAGCATCGGCCGCAGAGAGCTCAGGAATTTAGACCCCTTTTTGATGTTAGATGAATTTAAAGTCAGCAAGCCTGCAGGATTTCCTGACCACCCACACAGAGGCTTTGAAACAGTCACTTATCTGTTACAAGGCGTTTCAGCTCATGAGGATTTCTGTGGCCACAGTGGGACGCTGAAGCCTGGGGATTTACAGTGGATGACGGCAGGCAGAGGGGTAATGCACGCCGAAATGGCTGTGTCAGATGAGCCGCTCCACGGTCTACAGCTCTGGGTGAACCTGCGAAGCTCAGAGAAGATGGTGGAGCCACAGTATCAGGAACTGAAGAGCACAGATATCCCGAAACCCAGCAAGAATGGGGTGACCATCACTGTGATCTCCGGCGAAGCTTTGGGAAAGAAGTCAAAAGTGTATACAAGAACCCCAACCATGTACCTTGATTTTAAACTGGACCCTGCAGCAAAGCATGTTCAACCAGTCCCCTTAGGGTGGACGGCTTTTATCTACACACTGTCAGGATGTGTCCATGTTGGTCCCAGTGATGATCAGAGAAAAATTGAACCCCATCATACGGTGGTGCTTGATGATGGAGATGGCGTGCAATTTGAAAACAAGGACTCTGTGGTAACACACTTTGTGCTGATTGCAGGAGAACCGATCAAGGAACCAATTGTCCAACACGGTCCTTTTGTGATGAACACAGAGGAAGAAATATCACAAGCAATCAGTGACTTTAGGTCGGGAaccaatggatttgaaaaggcAAAGACCTGGGAATCCAAGATTCGCAacctctgaaaaacaaatcGTGTTTGTTTAGGATTAATGGTGGAAATAGGAATAGCTTGTTTTCCTCAAGCTGAGGTAATTGTTACTGAGAAATGCTTATGTAACTCACAAGATGATTTTCAACCTTTAAACACTACATTGTGGTTTAAAGCTATGCAATTATGTCTACAAAGGTGAAACAgatctcatatatatatatatatatatatatatattaatgtggtGGTATTTCTACATAGGAGTAAGAATTCGGTGGCTGGAAAGACTTTATTTGTCCCCTGAAACTGCTATCAAATATGATGTTATATTGCTGAAGTTGTTTTTCAtataatgaatcaatcaatcaaatacaatttGCATTGCTGTACAAATAAACAGTGGTTGATCTTTTCTAAA

Function

GO: NA

KEGG:

id description
K06911 PIR; quercetin 2,3-dioxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85038 lncRNA downstream 75350 2776259 ~ 2805164 (-) True G68077
TU85041 lncRNA downstream 78470 2782510 ~ 2802044 (-) False G68078
TU85040 lncRNA downstream 95101 2782510 ~ 2785413 (-) True G68078
TU85037 lncRNA downstream 109854 2769838 ~ 2770660 (-) True G68076
TU85032 lncRNA downstream 114340 2765190 ~ 2766174 (-) False G68073
TU85111 lncRNA upstream 136887 3029109 ~ 3032764 (-) True G68124
TU85159 lncRNA upstream 334643 3226865 ~ 3228150 (-) True G68162
TU85184 lncRNA upstream 498766 3390988 ~ 3391380 (-) False AMCG00014181
TU85251 lncRNA upstream 571213 3463435 ~ 3464792 (-) True G68224
TU85344 lncRNA upstream 1064780 3957002 ~ 3957266 (-) True G68304
AMCG00014153 mRNA downstream 630 2870461 ~ 2879884 (-) True AMCG00014153
AMCG00014155 mRNA downstream 12165 2850412 ~ 2868349 (-) True AMCG00014155
AMCG00014151 mRNA downstream 128519 2745345 ~ 2751995 (-) True AMCG00014151
AMCG00014150 mRNA downstream 145642 2731531 ~ 2734872 (-) True AMCG00014150
AMCG00014142 mRNA downstream 205104 2667981 ~ 2675410 (-) True AMCG00014142
AMCG00014154 mRNA upstream 1632 2893854 ~ 2904687 (-) True AMCG00014154
AMCG00014157 mRNA upstream 38392 2930614 ~ 2935152 (-) True AMCG00014157
AMCG00014160 mRNA upstream 43383 2935605 ~ 2937871 (-) True AMCG00014160
AMCG00014159 mRNA upstream 46325 2938547 ~ 2940833 (-) True AMCG00014159
AMCG00014158 mRNA upstream 53680 2945902 ~ 2952055 (-) True AMCG00014158
TU85055 other downstream 51370 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 236607 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 337817 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 962332 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 977899 1900640 ~ 1902615 (-) True G67832
TU86038 other upstream 4485866 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 4525376 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 5245109 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 5264007 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 5491063 8383285 ~ 8384224 (-) True G69156

Expression Profile