RNA id: AMCG00014173



Basic Information


Item Value
RNA id AMCG00014173
length 5554
RNA type mRNA
GC content 0.44
exon number 12
gene id AMCG00014173
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 3462068 ~ 3471988 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CAGCCGGGGTCTTGTGTCAGGCAGCGCGCAGGCGCACTGTCTCTCTCCGGCGGCTCTCGGCGCGGATTGCAAGAGAAACACGGGAAGCAGAAACAGATGGTCGGATTGAATCTGTGACTTCGCACATAAAGAGAGCGGGCGGAGTTGTTTTCCGTCGGCGCCGTGTTTTGACTGTCGAAACCGAAGCGTACTCGTCTCCACCGAGGACCGAGCAATGGCGGACAAAGAAGTGTATGACGATGCTGTGGAGGAGCGCGTCATCAACGAGGAGTACAAGATCTGGAAGAAGAACACGCCCTTCCTGTACGACCTGGTGATGACGCACGCCCTGGAGTGGCCGAGTCTCACCGTGCAGTGGCTCCCGGATGTGAACAGGCCAGAAGGGAAGGACTACGCCATCCACAGGCTGGTGCTGGGAACGCACACTTCGGACGAGCAGAACCACCTGGTCATCGCCAGCGTCCAGATCCCCAACGACGACGCGCAGTTCGACACGTCCCACTACGACAGCGAGAAAGGAGaattTGGAGGGTTTGGGTCGGTGAGCGGGAAGATCGAGATCGAAATCAAGATCAACCACGAGGGGGAGGTGAACCGGGCCAGGTACATGCCGCAGAACCCCTGTGTCATCGCCACTAAGACGCCCACTTCGGACGTGCTGGTGTTCGACTACACCAAACACCCCTCCAAACCAGGCGAGTACCCCAGCGGAGAGTGCAGCCCCGACCTGCGTCTGAGAGGACACCAGAAAGAGGGTTATGGTCTGTCCTGGAACCCCAACCTGAGCGGAAACCTGCTGAGTGCCTCCGACGACCACACGATCTGTCTGTGGGACATCAGCGCCGGGCCGAAGGAGGGAAAGATCGTAGACGCCAAGACCATCTTCACCGGCCACACCGCGGTGGTGGAGGACGTGTCGTGGCACCTGCTCCACGAGTCTCTGTTCGGCTCCGTGGCTGATGACCAGAAGCTGATGATCTGGGACACGCGGTCAAACAACACGTCCAAGCCCAGTCACTCGGTGGACGCCCACACTGCGGAGGTCAACTGCCTGTCCTTCAACCCCTACAGCGAGTTCATCCTGGCCACCGGATCTGCTGATAAGACTGTGGCCCTGTGGGATCTGAGGAACCTGAAACTGAAACTCCACTCCTTCGAGTCGCACAAGGACGAGATCTTCCAGGTGCAATGGTCCCCTCATAACGAAACCATCCTGGCTTCAAGTGGCACAGACAGAAGACTGAATGTCTGGGATTTGAGTAAAATTGGAGAGGAGCAGTCGGCTGAGGACGCAGAGGATGGGCCTCCTGAGCTCCTGTTCATTCACGGAGGACACACGGCGAAGATCTCCGACTTCTCCTGGAACCCCAACGAGCCGTGGGTGATTTGCTCCGTCTCTGAGGACAACATCATGCAAGTGTGGCAGATGGCCGAGAACATCTACAACGACGAAGAGCCCGACACCCCGGCCTCCGAGCTGGAAGGTCAGGGATCATAACGGCTGCCGCGCCCCTGGCCGGGTGGCAGCCAGCGCCAGGGAGAGCCGCAGCTCTGGCCTCTCCACCCGGCCCTCCGTGTAGATACACCGGCCTCCTCTCCATGCTCCAGCGTTAGGGTGTAGCTCATCAAAGCGGTCCCCATTATATTTTTCTATCGGAAGCGGCAGTTTGACACTGGCGTGGCCCGTGCCTCCAGGCAGCGGAGTCGGTACGGACGtggtttttttgttgttgtgaggaaaaaataaataaaaaaatacttttgtgaaTTTCAAATAGCGATGGAAAGCATTGAATCACACATCATGGCAgtaatgctttttcattttccaaagaTGTATTACCACACCAGCGCATTTTGCCATATTACCCTTATTTAAGAGCGCGTTTGACGCCGGGCCCGGCTGCCACGACTCCAGCCCTGTCCACAGGGAGAGAGGTGGCAGTGAACTCTTCTGGCATGGTAACCTTAAATTCCCTCTTtactttgtacttttttttttgttccattttgtgcaaaatatggtataaaatgcaataaactttttgtattaacttttaaaacgtcaaagctttgattttctTCCACTGGGAAATACGCCGAAGGAGTTCAGTAATATGGAGTGGTAAGTGTTCAGAGATTATAGTTTTATAGAAAGTAAGTTTTAATACTCTTAGGGTACCTTTTACTGTCAGCATTTTTAGATTGTTTCTATAAAACACTGGTCATAGAAATGAGTTCATAGCTGTAACTTGTATCATTTGAAATCCTAAAAGTGCATTCatgaaagtaaaagaaaataatcagtAAACACCAGTTTAATTGGCTCTGTACAGAATAGAAGTTGACACGTTCACAatcttggaaaaaaaactacaaaatgttttattgaaaagcaAGACAGGACTATCAGAACATCTTACAATCTCTCTTGATGGGACTTGGGCTTTAActttagaaaataaagctttttttcttcttgtgaaAAGCATAAAGTTGGTTTCTGCCTCATTTTCTTTCACAGTTAGTCTCATATACAACCTGTAGAGGTAGATTTCTTGCATAACCTGAGAGTCAAACTGTGGCGTTGCCAAAACGGAGGAAAGTAAAGACACTGAAAACAGTCGAAGCATTACAGCGCGGATGTCAGTACCGTGGATAAACGCACAGCCGCCTCTGTACACACAAAAGAGCTTTCTGATTAAGTACATCAcagcataacatttaaaaacaatttcacaCGTAAAGCAGGACAGGTTCTacatagaaatacaaaaataaattgcaacaACATGATGGCAAGACTTTTTTCTTGTACAGGTTGGATAATAACTTGTATTTATGAGTTACAACAGAAGTATAGAGGCCACAGTGAAGCTCAGTGAGCACTCGGCTCTTCTGCAGCCGTTTAAGGAGTCCTTTACATTcacattattcattaaaatcaaaatattgcTTCCAGAACCACGGTGATAATATTGTtggctgtctgtgtgttatAAAGCCACCTCTGAAATTGGTTTCATGTCACTCAGACCAtcctttgttatttttatgcattgataaactttttttttttatgtctcaCTCATCcttacatatttaatacatgttactcaataaacatgtataatttaCTCCAATTCCAcgtgtttctttcattttctacaAGCATGGGAAATTCAGGTTTAAAGGTcctgttcaaaataaaacatcacattcTTTAGACTCTGATGGAactctgaaaataatttaatctttcTAGATAAATATAGGCAGTAAAGTTTGTTAAACTggcaaaaacacttttttttgtttgtttttaagagtgAAATCAGAAGTGTTTTCATAACACACTTGACTGTCTGGATgttataatacacacatttcagtaGCTGAATGCCAGGCTGAGGATCAAGCTGTAGGAAGAAGTCCCTGTGTAatgctctggaaaaaatatcatatatatatataagaaatgcTGGTGCTCGGAGCAAGAGGAATTATTTGACAGTATGTCTTGCATGAATTCAGCTTGGTTCTTACATACCTTCTATTGCACACAACACACTTTAAATCTATTCTGCAgtgtgaaatacacacacattcaagtAACACTGAGACCATGATGCATGATACATGAAGCAATTAAAGTAATAAGTAGTAGGTGAGAGTTTCAAGggcttctttctttcttcttctcacTTAACACTGCTTACTTTGGCCGTTAAACACTTCTAAAATGACTTGTGTTGCCTACACTTGTTTGCTACATTACTGGTAAAAGCTCACTGAAGATTGATTCCCGTTTCATGCCGtgcataaataataaaggaatCTAAAGTCATCTTTCTGTACAGACACCAGAGTGGATGCTGTAGTCTAAAAGCATGACTTGGAATAAAGATCTTTAGAATCTGCatgaaaatagatttatttgtgttactcTACCGTTCTCTCTGTTCTCAAATGCATCCTTTTCACGACAAACACAGTGGCGTCTAAATGCTGGCAATTTAACCGCCCAAAAATATAATGCCACGTTAGtcccatttcaaaaacaatgaaGATTCAGAATGAAAAGGCTGTGGCAGCTTTTGCATGAAGATTACCCTGTtcaaaaatgtatctaaattGAGAAAGTGGGGTGCAAGGATCTTGGAAGAATTCCTGTTGAACCCCACATCGGAGGAGTCAGCAGAACGCAGCTGTGATCCCAGCCCTGAGGAGATTGGTGTGGTTATAAACCCTGTATTACCAGTTCGGTTTTTTGACTGGTTATGAGGATGTATGACTACCGACCAAGTCATTTTGTGCCTCTTCTGTACGGATATTGTCCAGAATATGACTATTGTCTTTTGAAAAGCAAGGAAAGATACATTCATCAGTCCAGTGTTCCCTGTCATTGGAATctctattgtaaagtgttttttaagcACAATAATGGTGCggtaatgcaaatatatatatagaataatgTGCATTATTGATAAAGGTAAAAAGGTAAATCAGATTCTGTACTTCCAGAAACTGAACTTTTATCGATCAGTCATACAATGTAGGTGCTGTACATAAGCAGCCACTAAATCCGGCTCAAATGTACTTGAATGTCAGGAAGttcctaaaaataaaagcacctgCCTGAGGCCCATGAACAGTTTAAAGTCTGTGTGACTGTCTTTTCAGAGGACAGCAGCTTCTCCACACTGTTAGCACAACCGATCGGGTCAAGAAGCCACATTTTGGAAAGAACATTAATGGGGAATGTTTTAAAGTGACTCTGAACTATATTCTGTTAAATTTTAAAGGGAATGTCGTTGAGAAAATGTTTCATGGCGCTGTCGGAGGCTTCAGAGGGTTTTAGTCAATATCGGAATGAGACCATAGTCATCCCAGCTGTCTTGCAGGGATCCAATTTAATCAATTGTGCTGCTTGAACAACGACGAACTGGATCAAGAAAGTGTGGGGCGAAATACAACCTCTCCATTTCCTGTGCCGAGGAAGGAAATGTTTCCGTTGACAAGACAGTGGTGCGACAAGTCAACGAAGCTCGTAACAGTCCAGTAAAGATCCTGAAAGTCGACGTCTTCGCAGCTTTTGCCTGGGAGAGGTTTCCGTACGAAGCTTTGCAAACCAAGCTGCTAATCTCATAAAACTCATCCACTTGTGCGAAAGAGGAACGAATCTTAAGAAATATAGCCCTATGCATCAGTCCGTTTCTTAAAAAATAGTTTAGATTTCTCTGAAATGTTACATCTGTACACTTGTTTCAGCCAGGATGGCCATATCGGAAGGGAAAGTTAATAAAGAATGAGGCAGACGTGCGCAAAACATTGTGagaaacaaactatatataaagTAGTCGACTCCAGAGCTGCCGAGTCACAGTTTGAACCACATTAAATTTCCTAAGAAAATACAGGTGTGGTAGAAAATGAAGTAAGAAATCCTCACCACAAAGCCAATAATTACCAATAAGAGCAAAttataattactactactattattaattttattattacacaaaaatatatacctcgagagagagagaga

Function


GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006260 DNA replication biological_process
GO:0035098 ESC/E(Z) complex cellular_component

KEGG:

id description
K10752 RBBP4, HAT2, CAF1, MIS16; histone-binding protein RBBP4

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU85168 lncRNA upstream 86279 3375585 ~ 3375789 (+) True G68167
TU85167 lncRNA upstream 86920 3374837 ~ 3375148 (+) True G68166
TU85150 lncRNA upstream 233942 3226859 ~ 3228126 (+) True G68153
TU85148 lncRNA upstream 235569 3224574 ~ 3226499 (+) True G68151
TU84995 lncRNA upstream 485558 2976214 ~ 2976510 (+) True G68046
TU85329 lncRNA downstream 482378 3954366 ~ 3955265 (+) True G68292
TU85358 lncRNA downstream 611775 4083763 ~ 4083964 (+) True G68317
TU85370 lncRNA downstream 655488 4127476 ~ 4131718 (+) True AMCG00014196
TU85439 lncRNA downstream 821338 4293326 ~ 4293526 (+) True G68374
TU85441 lncRNA downstream 822829 4294817 ~ 4295819 (+) True G68376
AMCG00014176 mRNA upstream 9578 3434157 ~ 3452490 (+) True AMCG00014176
AMCG00014175 mRNA upstream 52961 3398291 ~ 3409107 (+) True AMCG00014175
AMCG00014174 mRNA upstream 64945 3391607 ~ 3397123 (+) True AMCG00014174
AMCG00014170 mRNA upstream 83795 3377692 ~ 3378273 (+) True AMCG00014170
AMCG00014171 mRNA upstream 91124 3339352 ~ 3370944 (+) True AMCG00014171
AMCG00014184 mRNA downstream 17491 3489479 ~ 3511658 (+) True AMCG00014184
AMCG00014182 mRNA downstream 55029 3527017 ~ 3554734 (+) True AMCG00014182
AMCG00014183 mRNA downstream 86930 3558918 ~ 3559709 (+) True AMCG00014183
AMCG00014188 mRNA downstream 110631 3582619 ~ 3582945 (+) True AMCG00014188
AMCG00014187 mRNA downstream 123107 3595095 ~ 3615081 (+) True AMCG00014187
TU84895 other upstream 751739 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other upstream 751739 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other upstream 751739 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other upstream 751739 2709024 ~ 2710329 (+) True AMCG00014146
TU84815 other upstream 1331923 2126872 ~ 2130145 (+) True G67896
TU85565 other downstream 1177212 4649200 ~ 4651964 (+) True G68475
TU85567 other downstream 1177212 4649200 ~ 4651964 (+) False G68475
TU86015 other downstream 3874207 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 3941652 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 6531070 10003058 ~ 10008648 (+) True G69406

Expression Profile



Homologous


species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00029372 True 2116 mRNA 0.45 12 NC_007130.7 30999833 ~ 31007417 (-)
grasscarp (Ctenopharyngodon idella) CI01000305_00391756_00400828.mRNA False 2493 mRNA 0.44 11 CI01000305 390763 ~ 401128 (+)