RNA id: AMCG00014192


Basic Information

Item Value
RNA id AMCG00014192
length 2974
RNA type mRNA
GC content 0.51
exon number 13
gene id AMCG00014192
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 3933258 ~ 3950277 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTCAGAACGCGTTTCCTCTCCCGTCCGCCGCATCCAAACTCTGTCTCCAGCTTTCGGGAGCGGCGTGGCTTTGATTAAGCGCGGCGGGTAACGGGTTAAGGAGCGGGGGTCCGGattcctcctctcctgctcgCCATGATGAACAAATGAACTCTCGGGGAATGAAATTTAAATTTCACAAAGGAGAGAAAGTGCTCTGCTTCGAACCGGACCCCACGAAGGCCAAAGTGCTGTACGATGCGAAGGTCGTCGATGTTGTTGTTGGAAAAGATGAGCGGGGTAGAAAGGTCCCAGAGTATCTGATTCATTTTAATGGTTGGAACAGAAGCTGGGATAGATGGGCAGCAGAGGATCATGTTCTTCGTGACACCGATGAAAACCGCAGATTACAGCGTAAACTGGCACGGAAAGCTGTGGCTCGCATGAGGAGAAAGGGATGGAAGAAGCGACGCTGTCGTCTGCCAGGTGTTGACTCAGTCCTAAAAACCCTTCCTGAAGACGAAAAAGAGGAAAGCGATGAGATCTCTTTGAGCTCGTCTTCTGAGGACAGTGACGAGGACGATTCGGAGGACGTGGAGTCGTTAAAAAGTGAGGACACGGATATTGAGGAGACTGCAGACATGAAAGAGGAACAGGAAGCGCCTCCTAAGAAGGAAAATGAGGACAAAACCATCAACATAGAAATCCCTGAGGTGTTGAAGAAGAAGCTGGAGGATGACTGCTACTACATTAACAAGAGGAAGAAGTTGGTCAAGCTACCATGCCAAATGAACATTGTGAACATCCTGGAGTCCTACGTCAAGCACTTCGCTATAAATGCAGCATTCTCCGCGAACGAGCGGTGTCGGCACCACCAGGCGACGCCTCAGACGAACCTCAACCCTCACTACGTCCCACCAGAGAAGAACGAGGAGCTTTGTAAAGAAATGGTGGACGGCTTGCGGATCACCTTTGATTTCACGCTCCCGATGATCCTGCTGTACCAGTACGAACACGCTCAGTTCAAGAAGGTCAGCTCCTCCAAGTTCTTCATGCCAATCAAGGACAACTCGGTCACTTCCAGCAGGACCCTGGAGGAGTGCTCCCCCAGCCCCCCGGCTCTGAACCCCTCCACCCCACAGTCCACGGACAGCCAGCCGCCGGTCAGTGAGGCGTCCACCCCCAAGCGCAAGAAGGCCGAGCCCGAGGCGCTGCAGTCCCTGCGCCGGTCCACGCGCCACACCTCCGGGGGTGACCGGCTGTCCGAAAGCAGCGCCTCCCCGCAGCCCAAGCGCCGCCACGCCGACACGCCCGCGCCACTTCCCAAGTTCTTCCTCAACATCGAGAAGAaaACTCCTGTTCACAGCGGCTCCTCGTCTCCTCTGACTCTGACTCCCAGTAAAGAGGGCAGCTCGATGCTGTCTGGTCTCGAAAGCAGAAGGAACAACGAATTAAACGAGGTGCTGAGCTGGAAGCTGACTCCTGACAACTACCCGCAGAGCGACCAGCCTCCTCCGCCCTCCTACATGTATGGATCACAGCATCTGCTGCGGCTCTTCGTGAAGCTTCCAGAGATCCTGGGCAAGATGCACATCCCAGACAAGAACCTGAGGGCCCTAGTCAAACACCTGGAGCTCTTCCTCAGGTTTCTGGCTGAGTTTCACGAGGACTTCTTCCCTGAATCTGCGTACGTTTCGGCGTCGGAGGCGCACTACAGCATGAAGCACCCGCGGGCCGTCTGACGCGCGCCTCGACCCACGAACCGATCACAGCATCTCATGTAGAGGACATTTACATTACCGCTCCGTGCCCTGTAGAGGCGTCGGAGGACTGCGGATGACCTTCGTTAAGCCGTAAGGGGACGGGTTGCTTCATGTGAAGTCGCCGGAATGGAACCGCGTCCGTCCCGTTCACTGGGGCTGAAGAATGGACCCACGTTTCCATTTCCCCTTTCGCTGCCCGAGCCTGTCATTGACTTTGAATGCAAAGCGACTGACTGCGTTCGTCCTCCTGCTGTCGTGCGTGTTTATCTCAGTGTGTCAGGCGAGCTTGGGAGACAAAGGCAAGCCGCTCTGAAGACGGGGCTGACTTTTAACGGCTGAAACCGGTCAGGGTCTCGTTCTTTTCACACTTTCTGCTCGGCCTGATGTTTAAGTTCCTGCTTTTATATCTCCGATTCTACCTGTCGTTCTGTGTTTAAATGTTCgagattatacattttctgcaagGGAATGTTCCTCCCTATATCTGTTATTAGTCGTACACTCtccaaattatattattgtccTTCCATTTTCAGGAGAAATGTCAATAATATAAACTGCTACAGAGAATCTACTCCAGTTCTGGTCTGTTATGAAACATCCAGAACAAGTAAAAACtttcaaagaaacattttttgttctcAGTCCTTGTTTCAGTGCGTCAGTTTAAAATTTGTACGAGTATCCAATTGTTTCTGAGAAATGTATGTCTATAATATCCTCACTGaggttagtttttgtttgtctgtagctcaatatgtaaatgatttttaaatgtgtcagtGCCTGCCTCCCACAGTCCTGCTTTTCTCATTGTCTCTGTAACTGACACACATTACGTCAATCCCATCATGATGCAGGGAGTTCAAAAAGCGACACAAACTTTGACTGAATGATTCACTGTCATTCCCCCCTTCCATAACACCCTTCGGTTCAGCTGTTTCCGTTGTTTGTATCCTGTTTGATGCagggggaggtggggaggggaagtgaaatgaaagcaaaaccCCCACAAAGTCTGCTAAGGGACACAAAAGAGAAACCCAAATCTATACCCAATGACTATTAGCGAAACGGCATTTTGTGAGAAGAACTGCCCTCGTTTGAGTATTTGGATCAGAATGAGAgatgctgtaaaaataaacagaactgaCGCACACCTGAGTAGGTCCACGCATTCTACTTTTAAGAACTTAATATTTTGGAATTGCATTCAGCTAAATCAACGGTC

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K18403 MSL3; male-specific lethal 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85192 lncRNA upstream 449609 3410978 ~ 3483649 (+) True G68189
TU85168 lncRNA upstream 557469 3375585 ~ 3375789 (+) True G68167
TU85167 lncRNA upstream 558110 3374837 ~ 3375148 (+) True G68166
TU85150 lncRNA upstream 705132 3226859 ~ 3228126 (+) True G68153
TU85148 lncRNA upstream 706759 3224574 ~ 3226499 (+) True G68151
TU85329 lncRNA downstream 4089 3954366 ~ 3955265 (+) True G68292
TU85358 lncRNA downstream 133486 4083763 ~ 4083964 (+) True G68317
TU85370 lncRNA downstream 177199 4127476 ~ 4131718 (+) True AMCG00014196
TU85439 lncRNA downstream 343049 4293326 ~ 4293526 (+) True G68374
TU85441 lncRNA downstream 344540 4294817 ~ 4295819 (+) True G68376
AMCG00014186 mRNA upstream 304176 3617227 ~ 3629082 (+) True AMCG00014186
AMCG00014187 mRNA upstream 318177 3595095 ~ 3615081 (+) True AMCG00014187
AMCG00014188 mRNA upstream 350313 3582619 ~ 3582945 (+) True AMCG00014188
AMCG00014183 mRNA upstream 373549 3558918 ~ 3559709 (+) True AMCG00014183
AMCG00014182 mRNA upstream 378524 3527017 ~ 3554734 (+) True AMCG00014182
AMCG00014194 mRNA downstream 96694 4046971 ~ 4081904 (+) True AMCG00014194
AMCG00014195 mRNA downstream 138086 4088363 ~ 4098941 (+) True AMCG00014195
AMCG00014197 mRNA downstream 155907 4106184 ~ 4118772 (+) True AMCG00014197
AMCG00014196 mRNA downstream 177354 4127631 ~ 4129668 (+) False AMCG00014196
AMCG00014199 mRNA downstream 254878 4205155 ~ 4220124 (+) True AMCG00014199
TU84895 other upstream 1222929 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other upstream 1222929 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other upstream 1222929 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other upstream 1222929 2709024 ~ 2710329 (+) True AMCG00014146
TU84815 other upstream 1803113 2126872 ~ 2130145 (+) True G67896
TU85565 other downstream 698923 4649200 ~ 4651964 (+) True G68475
TU85567 other downstream 698923 4649200 ~ 4651964 (+) False G68475
TU86015 other downstream 3395918 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 3463363 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 6052781 10003058 ~ 10008648 (+) True G69406

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU601436 False 2356 lncRNA 0.45 12 CI01000382 23737 ~ 143550 (-)