RNA id: AMCG00014195


Basic Information

Item Value
RNA id AMCG00014195
length 2665
RNA type mRNA
GC content 0.46
exon number 7
gene id AMCG00014195
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 4088363 ~ 4098941 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGTCGTATAGGTGCCACTGTGTCACTGCAACACTAACACCACATTGCAAAATCAAGAATATTATGATGGCTTTAAAGACGCGTGAGCGGAGGGCGGGCCGGGGGCAGGTCTGGACGCATCATTTCCTCTCCCCCACCCCGGCCTCCTTCCTTCAAGACCGCAGCGAGAGCAGAGCTGCTACCGACAGCGGCGGCGAGAAAGACAGTGGCAAGGAGGCCGACTTTGCAACTTTCCctctgcttgttttgtttttgcattgtttttgtatcCTTTCCGAAGTGtagttgtatatatttattttatccgACCATGCCGAACATCGTGCTTTTTAGCGGCAGTTCCCACCACGACCTGTCACAGAAAGTAGCAGACCGGCTCGGGCTGGAGTTGGGCAAAGTGGTCACCAAGAAATTCAGCAATCAAGAAACGTGtgtgGAGATCGGGGAGAGCGTGCGAGGCGAGGATGTGTACATTGTCCAGAGcggctgcggagagatcaacgACAACCTGATGGAGCTCCTCATCATGATCAACGCGTGCAAGATCGCGTCCTCCTCCCGCGTGACGGCCGTCATCCCCTGCTTCCCCTATGCCCGGCAAGACAAGAAGGACAAGAGCCGCGCGCCCATCTCGGCCAAGCTCGTTGCCAACATGCTGTCGGTGGCCGGCGCGGACCATATCATTACCATGGACCTTCACGCCTCCCAGATtcagGGTTTCTTTGACATTGCTGTGGACAACCTCTATGCAGAGCCGGCAGTTCTACAGTGGATCAAAGAGAACATCCCGGAGTGGAAGAACTGCATAATCGTGTCGCCGGATGCCGGAGGAGCCAAGCGGGTGACTTCCATCGCCGACCGGCTGAACGTGGAGTTCGCTTTGATCCACAAGGAGAGGAAGAAGGCCAACGAAGTGGACCGCATGGTGCTGGTCGGGGACGTGAAGGACCGAGTGGCCATTCTGGTGGATGACATGGCGGACACTTGCGGCACCATCTGCCACGCGGCTGACAAATTGATGTCTGCTGGAGCTACTAAAGTCTACGCCATTCTGACCCACGGTATCTTCTCTGGGCCGGCCATCTCCCGCATAAACAACGCCGCTTTCGAGGCCGTGGTGGTGACCAACACTATTCCCCAGGACGAGAAGATGAAACAGTGTCCCAAGATTCAGGTGATCGACATCGCCATGATCCTGGCTGAGGCAATACGGAGAACCCACAACGGAGAGTCGGTCTCCTATCTATTCAGCCACGTACCCCTGTGAGGTGGAGGAGATGCGCGGACGGGAGTTTTCCTGGTCGGCTTCTGTACGACTCTAGTAGCACCACCCTCGACACTTGGAGGGACCACCGCAAGAGACTAAACGTTCATCTGATCTCGAGTGACATTTCCAGCTCCAGACGTCGCCTCACGGACGGGATTCCTGCGAGGCGAGGCGCTCACTTTCCTGCTTTAAGACCCAGAACACTGAATGTTGCCTTAATTGAGGGGCTTAGTTTTAGTTTATACCTCATGGTGTTTGTATGTTGATGTGAATGAAGAATTCCCTTCGAGTTCCCTTCGTCTTTCGATACACATTGATGGCTTTTGCTacagatttataaatgtataagtaataaacaaaagttgtattttagttttgtgaTTTATCTGCGGGTGAAAGCTATTTTCTCTTAAGTATTGAATCTACCAAATAGTCCTACCCATTCTTAATACGGAATTGAAATGTTTCAGCAGAAGGTCATTTACATTGCTGCGGTCTTCTCCCTGTGTGtcttaatttgtttagttttttggggttgggatattatttttcttcatgctttgataataaaataagcaataaatacaaaatattaatgcggttttgaaataaacaacccaacaaaaaaaatccgATTTTTGGAATTCGGTCCCAAGTTTATTTTACAGGTTAAAGAGAAACAGTtggaaaatgttacattatctTCTTTTGGGGGGTTAGTATTCAAAAGTAGTCACACTTACCAAAGTACTTCATTCTCAAATAGTTTGGGTGGGACTGTAATCTCTGCTTGTGTTACAGATGAGCTGCTTTCTTGTCCTTTTGTTCATTTCCGTTAAATATCTGCTTTCTAGTTTAATTTGTGAGGGGttactttttataaaaataagtaaccaGTAcgtttcattcaaaataaagctGGTTATGTGAAAGATTTGAGTCTTGTTTTGTGGGGGGGAAGTTTAAATCTCACCTGAGCTTTGCATTGTTGGAACACTTACCTTTTCAAATTGCTTTGTAGTAGTCGGTGAAAATCTGCAGTCTCTGAATCTGACTCTTCACATCAATTTAAAGTTATCGGTTAGATGCTTCCTTATTGCCTCGGCTTTTGCACAGGGGACGTCtggttttgttatacataaGTCTATGCTGTTGTAAGCGTAGAACAATGTCTTTTAAgattatacaaataaagatCTTAATTTATTACGTAATGTTAGATCTTCAAAGGATAAGGAGGCCTAAAAACATCCCTTAAAGTCTGCAGCATGAAGGGGTTTGATGCAGGTTACAGTTTAAAGGGCATTATTCAATGATCTAGGTATTTTATGTGAATGCCAGTTTCATTTCTCTTtcgggttgtttttttttgtggcgCTATTTTCACAAGTTActtg

Function

GO:

id name namespace
GO:0009165 nucleotide biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0004749 ribose phosphate diphosphokinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K00948 PRPS, prsA; ribose-phosphate pyrophosphokinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85358 lncRNA upstream 4399 4083763 ~ 4083964 (+) True G68317
TU85329 lncRNA upstream 133098 3954366 ~ 3955265 (+) True G68292
TU85192 lncRNA upstream 604714 3410978 ~ 3483649 (+) True G68189
TU85168 lncRNA upstream 712574 3375585 ~ 3375789 (+) True G68167
TU85167 lncRNA upstream 713215 3374837 ~ 3375148 (+) True G68166
TU85370 lncRNA downstream 28535 4127476 ~ 4131718 (+) True AMCG00014196
TU85439 lncRNA downstream 194385 4293326 ~ 4293526 (+) True G68374
TU85441 lncRNA downstream 195876 4294817 ~ 4295819 (+) True G68376
TU85500 lncRNA downstream 401923 4500864 ~ 4550002 (+) True G68422
TU85517 lncRNA downstream 485533 4584474 ~ 4588428 (+) False G68434
AMCG00014194 mRNA upstream 6459 4046971 ~ 4081904 (+) True AMCG00014194
AMCG00014192 mRNA upstream 138086 3933258 ~ 3950277 (+) True AMCG00014192
AMCG00014186 mRNA upstream 459281 3617227 ~ 3629082 (+) True AMCG00014186
AMCG00014187 mRNA upstream 473282 3595095 ~ 3615081 (+) True AMCG00014187
AMCG00014188 mRNA upstream 505418 3582619 ~ 3582945 (+) True AMCG00014188
AMCG00014197 mRNA downstream 7243 4106184 ~ 4118772 (+) True AMCG00014197
AMCG00014196 mRNA downstream 28690 4127631 ~ 4129668 (+) False AMCG00014196
AMCG00014199 mRNA downstream 106214 4205155 ~ 4220124 (+) True AMCG00014199
AMCG00014198 mRNA downstream 124603 4223544 ~ 4227643 (+) True AMCG00014198
AMCG00014200 mRNA downstream 143869 4242810 ~ 4244022 (+) True AMCG00014200
TU84895 other upstream 1378034 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other upstream 1378034 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other upstream 1378034 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other upstream 1378034 2709024 ~ 2710329 (+) True AMCG00014146
TU84815 other upstream 1958218 2126872 ~ 2130145 (+) True G67896
TU85565 other downstream 550259 4649200 ~ 4651964 (+) True G68475
TU85567 other downstream 550259 4649200 ~ 4651964 (+) False G68475
TU86015 other downstream 3247254 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 3314699 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 5904117 10003058 ~ 10008648 (+) True G69406

Expression Profile