RNA id: AMCG00014196


Basic Information

Item Value
RNA id AMCG00014196
length 990
RNA type mRNA
GC content 0.46
exon number 3
gene id AMCG00014196
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 4127476 ~ 4131718 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTCCGCCGCCGCGTCCAGACAGAGACTGATCTCCGCGCAGTCGCACCCTGATATCCTGCAATCATGTCTGACAAACCAAACATGGAGGAAGTGACCAACTTCGACAAGACCAAACTGAAGAAGACGGAGACCCAGGAGAAAAATCCCTTGCCGTCAAAAGAAACCATTGAACAGGAGAAGCAGGCGGAGACGTCCTGAGGCGCGCCTGCGGGCTGCACTGTACATTCCACAAGCATTGCCTTCTTTTTTCACTTCTCTTAGCTGTAACTTTGTAACAAACTAAGTATGCGTTGTGATTGGACGAGACCAGATGACTGCGCTGCCCCCACCGCCCCCCCTACAGCACCAATTACAAGAAACTACTGACTGTCCGTCTGCGGGGGACTCGTCCGCCCGTCCCAGCGTCTTGGCTTTCTTTGATCCTCTCGTTGGCACCGACCCTCTGAACACGGAGGGGCTCCAGGGGGCGACCCACTCCTCCAGGGATCCACGTTAACATCTCCGTGCCGTGTGGCGTCCCGTGATCCgtaaaatgctttgaaaaaatcgagtgccattttttttttttatgatttaagtTCTTGGAATGCACaacccatttttgttttgatatgcaaataaaagtttaaaacgTGTAGCGCTTTGTGGTTCTTTTTAATGGAATAATGCAGACCATCGACACTGGAGACTGGAAGAAGAAGGGATTCTGTGTTTGAGTGCATTTCGGGACTCCATATTCAAATTTAAGGTTCATTgggatttttttggggggtgggggtagtgGTATTTNNNNNNNNNNTTTTTTCATCCTGTTTCAAGGCTTTCAGTAATGTGAGATGAATGTAAGAGATTTCAAGTTATAATAAACGTATTGCAGCTGCAATCTTCTGAATGTTACTGTAAAAAGCTGGAGCAACCGTATACTTTAGCACGAAACCTTTAAAGTAATGGAAACCAAAACTGTTTGAATAAAGTGGTTTATTTGCACA

Function

GO:

id name namespace
GO:0042989 sequestering of actin monomers biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85358 lncRNA upstream 43667 4083763 ~ 4083964 (+) True G68317
TU85329 lncRNA upstream 172366 3954366 ~ 3955265 (+) True G68292
TU85192 lncRNA upstream 643982 3410978 ~ 3483649 (+) True G68189
TU85168 lncRNA upstream 751842 3375585 ~ 3375789 (+) True G68167
TU85167 lncRNA upstream 752483 3374837 ~ 3375148 (+) True G68166
TU85439 lncRNA downstream 163658 4293326 ~ 4293526 (+) True G68374
TU85441 lncRNA downstream 165149 4294817 ~ 4295819 (+) True G68376
TU85500 lncRNA downstream 371196 4500864 ~ 4550002 (+) True G68422
TU85517 lncRNA downstream 454806 4584474 ~ 4588428 (+) False G68434
TU85518 lncRNA downstream 454806 4584474 ~ 4588428 (+) True G68434
AMCG00014197 mRNA upstream 8859 4106184 ~ 4118772 (+) True AMCG00014197
AMCG00014195 mRNA upstream 28690 4088363 ~ 4098941 (+) True AMCG00014195
AMCG00014194 mRNA upstream 45727 4046971 ~ 4081904 (+) True AMCG00014194
AMCG00014192 mRNA upstream 177354 3933258 ~ 3950277 (+) True AMCG00014192
AMCG00014186 mRNA upstream 498549 3617227 ~ 3629082 (+) True AMCG00014186
AMCG00014199 mRNA downstream 75487 4205155 ~ 4220124 (+) True AMCG00014199
AMCG00014198 mRNA downstream 93876 4223544 ~ 4227643 (+) True AMCG00014198
AMCG00014200 mRNA downstream 113142 4242810 ~ 4244022 (+) True AMCG00014200
AMCG00014201 mRNA downstream 161276 4290944 ~ 4291549 (+) True AMCG00014201
AMCG00014202 mRNA downstream 168673 4298341 ~ 4316679 (+) True AMCG00014202
TU84895 other upstream 1417302 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other upstream 1417302 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other upstream 1417302 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other upstream 1417302 2709024 ~ 2710329 (+) True AMCG00014146
TU84815 other upstream 1997486 2126872 ~ 2130145 (+) True G67896
TU85565 other downstream 519532 4649200 ~ 4651964 (+) True G68475
TU85567 other downstream 519532 4649200 ~ 4651964 (+) False G68475
TU86015 other downstream 3216527 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 3283972 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 5873390 10003058 ~ 10008648 (+) True G69406

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU233051 True 1089 lncRNA 0.39 2 CI01000049 192979 ~ 195338 (+)
rainbow trout (Oncorhynchus mykiss) TU2035180 True 618 lncRNA 0.47 3 NC_048586.1 12104164 ~ 12105918 (-)
eurasian perch (Perca fluviatilis) TU233051 True 327 lncRNA 0.38 2 NC_053128.1 1333823 ~ 1371734 (-)
tiger barb (Puntius tetrazona) TU73676 True 1170 lncRNA 0.41 3 NC_056705.1 3735955 ~ 3738165 (+)