RNA id: AMCG00014197


Basic Information

Item Value
RNA id AMCG00014197
length 8688
RNA type mRNA
GC content 0.42
exon number 3
gene id AMCG00014197
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 4106184 ~ 4118772 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCATGTGAAAGACCTTCAAAGTGGATAATGATCATCCTTCTCTTGGGGTTTCTTACCTCCAAACTCTTGGCCATTGGCTGGTACCCCAAAAGTCTGCCATGTAACGTAAGTCTCCAGAAGAACGGGAGTTCTGTAATTGTGGACTGTAATGAAAGAAGACTGACAGAGGTACCAAAAGGGGTGCCAGGAAATGCAACAAACTTGACAATGACCATCAACCACATCCCCAACATTTACAAGACTTCCTTTGTAGGCCTGGACAACCTCACAGAGATTGATTTCCGCTGCAACTGTGTGCCTATAAAGATAGGGCCCAAGGACCGCATGTGCACAAAAAGCCTGACTGTGGAGGATGGGAGCTTTTCTTCGCTGAAGAACCTGAGGGCACTGTACTTGGATGGCAATCAGCTCTCCAGCATACCTAGGGGACTTCCTCCCAATCTGAAATTGCTCAGCCTCGAAGTGAACAAGATTTTCACCATTCTTAGGCAGAACCTATCAGAACTGACAAACGTGGAGATTCTTTATTTCGGACAAAATTGCTACTATCGTAACCCCTGCAATACATCGTTTGAAATCGAGGAAGGCGCATTCCAGCAACTGGAGAAGCTGACTTTGTTATCGCTCAAATCAAATAACCTATCTTATGTTCCTCATAATCTTCCTTCAAGTCTAAAGGAGCTGTACCTTTATAATAACAACATTCAAAGAATATCAGAAGacgattttaaaaatatgaccaATCTAGAAACACTGGATCTGAGTGGAAACTGCCCACGATGCTATAATGCCCCCTTCCCTTGTGACCCCTGTCCGAACGATTCCCCATTGCAGATAGATCTACTAGCATTTCAGACtttaaagaaactaaaaatattgcGCCTTCACAGTAATTCTCTACGCAAGGTCCCTTCGGAATGGtttcaaaacatgaatgaaCTTAAGGTTTTAGACCTTTCATCAAACTTTTTGGCGACAGAGATAACTGTGGCCATTTTCCCCAAATTCCTGCAAAACCTTGAAGAGCTTGACCTTTCCTTCAATTATGAAAGACAGCGGTACCCAGCTTCACTTAGCCTCAGTCAATCATTCTCTTCATTAACTTCACTCACAGTCTTGAGGATCAAGGGTTATGTTTTCAAAGAGCTGACAAGCAGAGATTTAGAACCGTTAACGATGCTCCATAACCTGGAAGTAATTGATCTTGGCACCAACTTCATAAAACTGGCCAACCTCAATATTTTAAGACAGTTAAGaagttttcaaataataaatctcTCAGACAATAAAATATCCACTTCGTCCGAAGAAGGACCGAGTAATGGGCGGTCTTCCCTTTATTCTCCAATGGGAAGCAGTGTCCAGTACAATGATGGAGAAATCCATTATTTCAGGTATGATGAATATGCAAGAAGCTGCAAATCGAAGGACAAGGAACCTGGGTCTTTCACCGTGTTTGTGAACAAAAAATGTAGCCAGTTTGGAAAAGCACTAGATATTAGtaggaataatatatttttcattgatcCCAAAGAATTTATATTACTCGGAGAACTTAGATGTCTCAACCTCTCCGGCAATGCCATGAGTCAGTCATTAAATGGCTCTGAATTTATTCACTTGACCAATCTGCagtatttagatttttcattCAACCGTCTTGATTTGCTGTATGCTACAGCTTTCCAGGAACTGCAGAATTTAGTCATTTTAGATATCAGTCATAACAGCCATTACTTTTTATCCGAGGGATTAACACACATGTTAAATTTTACAAATAACTTGCCcaaactgcaaaaaataatgatgaactACAATAGAATTTCCACATCAACCAACACCGAGCTGGAAAGCAATTCCTTGGAAGTCCTGGAGTTTAAAGGAAACCGTCTAGATGTTTtatggagagatggagacacGCGAtacagtcattattttaaaaaattattcCGCTTAAAAGTCCTTGACATCTCTCACAACAATCTTAACTTCATCCCTGAGCAGGTTTTCCGAGGCATGCCAGACCAGCTCTCTGAGCTCTACTTAAACAATAACAGGCTGAAAACTTTCAACTGGGGGAAGCTACAATTACTCCCTCACTTGCAGATCTTAGACCTCAGTAACAACAAGCTAACGACTGTGCCTCGTCAGCTCTCCAACTGTACCAGATCCCTGAAAAATCTTCTCTTGAGCAAGAACCAAATCTCCAAACTGACCACGTATTTCCTGAGGGACGCATTTAACCTGAAGTACCTGGACATCAGCTACAAccaaatcaaatacatacagCAGTCCAGTTTCCCGGAAAACGTTTTGAATAAATTAGATATGCTACTGCTGCATGGGAATAAGTTCATGTGCACGTGTGACGCAGTCTGGTTCACAGTGTGGATCAACCAAACGACTGTCAACATTCCTCGACTTGCTACAGACGTCACCTGTGCGGCCCCTGGGGCTCAGAGAGGCCGAAGTGTCATATTTCTGGATCTGCAGACGTGCCAGCACAACTCCATTTCCATCATACTCTACATCTTTCTAACTTCCTTCATTCTCTGCTTCCTCACGCTGTCAATTTCCAGTCATCTCTTCTTCTGGGATGTCTGGTACATCTATCACTTCTGCACTGCCAAGGTGAGGGGCTACCATCCCCTGTCGTCACAAAACACGTGCTATGATGCGTTTGTCGTATACGACAGAAAGGACGAGGCAGTCTCCGAATGGGTTTTCCACGAGTTAAGATCTCACCTGGAAGAAGAGGGGGACACACACTTCCTGTTGTGCTTGGAAGAGAGAGACTGGATGCCTGGTTGCCCACTCATTGACAATCTATCCCAGAGCATACAGCAAAGCAGAAAGACTATTTTTGTGCTCACCAACAAATACATCTTGAGTGGGAGTTTCAAGACAGCCTTTTACATGGCTCATCAGCGGCTCATGGACGAGAAAGCTGATGTAATTATTCTGATTTTCCTCGAGAAATGCCTGAAGCAGTCCAAATATCTCAGGCTACGTAAAAAACTCTACAGAAGCTCTGTTCTTGAGTGGCCATCAAATCCCCAAGCCAAGCATTTGTTTTGGCTGTGTTTGCGGAATGCAATGACTGCAAATGGCCACACACATTATAATCCGTTCCTTCCTGCACATCGCTGGGTTTCAAGGTATCTGCCATGTGACGTGAATGTTAGAAATAACACTACTGTGAGCTTTGACTGCAGTTTTAGACGACTGACTGAAGTCCCGGCTGATGTCAACATGAATGCGACAACCCTTAATCTGAAAGGAAATCAAATACAACATATTTCTAACACCTCTTTCCGGAATCTGAAGAACCTTAAAGTTCTAACCCTAAACtggaacaataaacacaaacctgGCCTCACCATTGCGAAGGACACCTTTGCCGCTTTGGCCAATTTAGAGATTTTACTTCTGGATGGAAATTTGCTCACTGACATACCTACTGGCTTTCCACCCGGGCTCAAGGTTTTAAGTcttaattcaaacaaaatagcTTCCATTGGATCGGAAAACTTCACTGGTATCCCAAATGTCACAGAGATCAGGATTAACAGGAACTGTTACTATCACAATGGTTGTAATGACTCTTTAGCTATACAGAACGGGACCTTCTCACAGCTCACACATTTGTTACGTCTGTCCTTGATTTTTAACAGGTTGGCCAGGGTACCCCTAGACCTGCCTACATCTTTACAGCTCCTTCGtcttagtttaaataaaattgagCATGTCGATCATCTGGACTTTCAGAATCTGTCCGAACTCAGGATGCTGGATCTTTCTGGAAACTGTCCAAGGTGCTCCAATGCCCCGTTTCCTTGTGAAACTTGCGAGACTGAGAAAGGCGCAATAAAGGTGCATCCACTAGCTTTTCATAACCTTACACAGTTGGAAGAACTGCGGCTTTCCGGAAACTCGCTCTTTAAACTCCATGCCTCATGGTTTCAGAATTGTCCTAAGCTAAAGTATCTGTACCTTTCCTTCAACTCTTTAATCAGTGAAATTGCCACCGGAGAATTTCTTACCGTTTTACCGCACGTCGAAGTTGTGGACTTGTCATTCAACTTCGATCCTAAGTCCTATCCGAGCAGAATGACACTCTCTCCAAACTTTTCCCAATTACTTTCGTTAAGGACTTTGCATTTTGAGGGTTATGTATTCAGAAATATCGAGGGCAATGATCTGCAGCCTCTCTTCAACCTCCAAAACCTTTCTGTGTTAAACTTCGGCACAAACTTTCTCCAGTATGTTGATCTCACCCTGTTTCAAAACTTTTCTAATCTTTCCTTGATATATCTCTCAGAAAACAGACTTGCATCCCAGTCAAGGAGAACGAACCTGTCTTGCAGCAGCGAAAATGACGCACACCACATTTTAAGCAGACCACTGTTAAAAGACCGGGCCATTGATAAAAGAGATCAAAACTATATTGTTCATAAAGATGGAGACTATCGTTTAAGTCTCCCATTTGTTAAGCCCAAATGTCTTCTTTACGGACCAGCTCTTGATCTcagtaaaaacaatatattttatatcaccCCTGAACTCTTCGAAGGTCTAAAAAATTTGACATGTCTGAATCTTTCAGTTAATTCTATCGCAGATTCTTTCAACGGCACTGAATTCATTCACTTACCAAATCTCCGGTACTTAGACTTGTCTCACAATAAAATAGACCTGGCATATGACTATGCTTTTTCTGAGTTAAGCTATCTGGAAGTGTTGGACATTAGTTACAATCCGCATTATTTTTTGGTGGCAGGAGTGATACATAACTTAGGTTTCCTCAAACACCTCCACTTTCTGAAAGTGTTGAACCTCAGCTGGaatgaaatatttactttaagtAAAGATAAAGAGATGAGCAGTGAGTCTCTGAACAAGCTAGATTTTCAAGGAAATCGACTGGACATACTATGGAAAGATGATAAAAGATATATAGGACTTTTCGCAAAGCTGGTGAACTTGCAATATCTTGATCTGTCCTACAATAAGCTCCAGAACATACCATCAgctgtttattataatttaccaAAGAACCTGACGCATCTcaatttaaacaacaataaacttAAATGTTTTCAGTGGGAGCATCTTATAAACTTATGGCATTTAGAAGTCTTGGATTTAAGCCATAATAACCTGGAAAATGTGTCTGAAAAGCtcacaaatcacacaaattCCCTCATAAGGCTTGACCTGAGCTACAATAAGATCGCTCAGctctttgattattttcttcagGGCGCAAGAAGCCTCCATTTTCTATATTTGAATCACAATAATCTGAGACTCTTAAACGCGCATACGTTCCCCTCCGGGCCAGACACCTCCTTGAAAGTCTTATCCTTAAAAGGAAACCCATTTCAATGCACATGTGAGATATTTGACTTCAAAATGTGGATCAATAAAACTGACATTGAGATACCAAGGCTGGCCACAGATGTCACCTGCGCATCACCTGAAAATCGGAAAGGAATGGGTATCATAACTTTTGACCTTCAGGAATGTATCAACGATAGTACAtctgctgtattgtttttgctttctacCTTAACTATTGTTCTGATTATTACAGTAGCTATaatgcagcatttgttttactgGGATGTCTGGTACATTTTCCATTACTGCAAGGCAAAGATTAAGGGTTACCGTTACCTGGCATCCACAGACAACATCTACAATGCCTTCATCACGTACGACACTAAAGATCCAGTCGTCACTGACTGGGTCTTCAATCACCTCCGAGTCCAGCTggaggagaagggggaaaaatTCCTCCCGATTTGCCTGGAGGAACGGGACTGGCACCCAGGGGCCCCTGTCATAGACAACCTGTCTCAGAGCATCCGGCAAAGTCGGAAGACCGTGTTCGTCCTGACGGAGAGGTATGTGAACAGTGGGAACTTCAGGTTAGCCTTCTACCTGGCCCACCAGAGGCTGCTGGACGACAACACGGACGTGATCGTGCTGGTGTTGTTGGAGCCCGTCCTGCAGTACTCCCAGTTCTTCAGGTTACGGAAAAGACTGTGTCGGAAGACCATCCTAGAGTGGCCGAAGAACCCTCACGCAGAAGACTGGTTCTGGCAGAGTCTCAGAAACGTAACTCTTCCCTTCCACTGGCACGGCTCCttaatcctgtttttttcttattttgtacacGGAAAACTTGAATATCGTTGGACTTCGAGAACGCTTCCCTGTGATGTCACTGAAAATAAGAATAACAGTGACATCATTTTTAACTGCAGTGAGCGCCACCTGACGGAAGTGCCACAGGGGATTTCTGCGAATGCAACTAAGGTGCTCCTTTTGGAAAACTCAATCCGTAATGTTTCCGTGCAGTCCTTCTTCAACCTCCAAAACCTCACATTAATAAACCTCAACTGGAATGGCAAAGACAAGGAGGTAAGCATTGCAGACAGAACATTCTCCAGGTTGACAAACCTACAGGAGTTGCATTTGGATGGCAATGGTCTTTGGAGGATTCCCAAATGGCTCCCACTGGCACTGAAACTCCTCAGTGTGAGAAAAAACAGCATCATCTCTGTTAGGAGAAACTATTTTTCTGAGCTGGACAATCTGGAAGAAATCTATCTGGACAAAAACTGCTACTTCTGGAATCCATGCAATAAGTCCTACCACATAGACAATGGAAGTTTTGCCAATCTTACGCAGTTGCGCATTTTGTCGTTGACCTATAACAACTTAACCACTGTTCCAAAAAACCTGCCGCATTCCTTAGAAGACCTTTACCTCGGATCGAATCAAATACAGCGTGTCAATGAGCATGATTTCAGCAGCCTGCCAGGACTGCAGATTCTCGACCTCTCGGGTAACTGTCCTCGATGTCACAATGCCCCGTTTCCGTGTGTGCCCTGTCCCAATCACTCCATCGAGATCCATCCTCTGGCTTTCCACAATCTGACACATCTACAAGAGCTACATCTCTCGGGGAACTCGCTCCGCAGCCTCCCAAGCTCTTGGTTTGACAGTTTACAGAATCTGCAACAGctgtttctttcctttaattttCTAACCAGTGCAATTGCCGAAGGTAACTTTTTGGACAACTTAGCTCAACTTAAAAAGATAGACTTGTCCTATAATTACAACTTCAAGGCCTACCCTGAGACCCTCACACTTTCACCCAATTTCTCAAAACTGGAATCCCTTAAAACTTTTCATATCGCTGGCTATGTTTTCCAAAAAGTATGTGAACGAGATTTAAGTCCACTTTTCAATCTGAAGAATCTCTCTGTGCTGAATTTGGGTACAAACTTCATCACATCCACAAAGTTGTCAGTGTTTCAGAAATTTGAAAACTTGAAATTGGTATATTTATCAGAAAACAGACTTGCACCTGCACCACACCTAAACGATATGATTAATGGCCCAAACACAGGTCTGCGCTGGAAACCCCCAAATCTGGGCTATAGACTATCAAAGGAAAAGGAGTTTGACTATGAATTATCTCATCTACTTGTGAAGCATGAGTGCTTTGTCTATGGTAAAGTGTTAGATCTCAGCTcgaataatatatttttcatttacccTGAGCAATTCGAAGGTAATGGCAACATCTCCTGTCTGAACCTCTCGAAAAACGGTCTCGCGACTGCCTTTAACGGTTCTGAATTCACCCATCTCCCGAGGCTTAAATATCTAGACCTCTCCTTCAATAAGATTGATTTAGCCTACGATGCAGCGTTTTCAGAATTAAAGGAACTTGAAGTCCTTGACATCAGTTTTAATCctcattatttttctgtgtcagGAGTGACACACAACTTAGGCTTCCTAAAACACCTGGAGTTTCTGAAAGTGCTCAACCTGAGCCAAAATAACATCTTTACTTTAACAAATAAGGAGTTGAGCAGCAAATCCCTTAAGGagcttcattttcaaaataaccAACTACACGTATTATGGAAAGAGAACGACCATTCTTACTGGGGGATTTTCAAAAATCTTTTGAATCTGTTGCACCTTGACATATCgaataataaactaaaaactattCCATCTGGAGTTTACAGCCATTTGCCCCAAAAtttaactacatttattttaagtaaaaatgaACTGATTAGTTTTGACTGGAAAaagctgaaacattttaaacacctcAAGGTTCTGAATCTGGGGGGTAATAAGCTATCTTGTGTGACGGCACACCTCTCAAATTACTCAAAGACACTCGAACTTCTTGTCTTAAGCAATAATTATATTGCTCGGCTCACCGGTGGTTTTCTCCAGGGTGCAAAATACCTTTTCTACCTTGATTTAagttataataaaatgaaaataataaacgaGTCAGATTTGTTTACCGGACCAGACAGCAATTTGAAGACCTTCTCATTGAAGGGTAATCCATTTGACTGTACATGtgatattttagatttgattCTGTGGATAAAGAACAATGATATTGACATACCGCTGCTGGCCTCAGATGTCACCTGTGCCATGCCTGCagacaggaaaggaaagagCATTATTACCTTTGACCTCAAGGAATGTGTTGATGACAGCATAGCAGCCATTATTTCTTTTCTCACCTCCTTTCTTATTTTGTGCACTATGGCCGTAGCTGTCATGATGCATGTTTTCTACTGGGATGTCTGGTACCTTTACCACTTCAGCAAGGCAAAGATTAAG

Function

GO: NA

KEGG:

id description
K05404 TLR7; toll-like receptor 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85358 lncRNA upstream 22220 4083763 ~ 4083964 (+) True G68317
TU85329 lncRNA upstream 150919 3954366 ~ 3955265 (+) True G68292
TU85192 lncRNA upstream 622535 3410978 ~ 3483649 (+) True G68189
TU85168 lncRNA upstream 730395 3375585 ~ 3375789 (+) True G68167
TU85167 lncRNA upstream 731036 3374837 ~ 3375148 (+) True G68166
TU85370 lncRNA downstream 8704 4127476 ~ 4131718 (+) True AMCG00014196
TU85439 lncRNA downstream 174554 4293326 ~ 4293526 (+) True G68374
TU85441 lncRNA downstream 176045 4294817 ~ 4295819 (+) True G68376
TU85500 lncRNA downstream 382092 4500864 ~ 4550002 (+) True G68422
TU85517 lncRNA downstream 465702 4584474 ~ 4588428 (+) False G68434
AMCG00014195 mRNA upstream 7243 4088363 ~ 4098941 (+) True AMCG00014195
AMCG00014194 mRNA upstream 24280 4046971 ~ 4081904 (+) True AMCG00014194
AMCG00014192 mRNA upstream 155907 3933258 ~ 3950277 (+) True AMCG00014192
AMCG00014186 mRNA upstream 477102 3617227 ~ 3629082 (+) True AMCG00014186
AMCG00014187 mRNA upstream 491103 3595095 ~ 3615081 (+) True AMCG00014187
AMCG00014196 mRNA downstream 8859 4127631 ~ 4129668 (+) False AMCG00014196
AMCG00014199 mRNA downstream 86383 4205155 ~ 4220124 (+) True AMCG00014199
AMCG00014198 mRNA downstream 104772 4223544 ~ 4227643 (+) True AMCG00014198
AMCG00014200 mRNA downstream 124038 4242810 ~ 4244022 (+) True AMCG00014200
AMCG00014201 mRNA downstream 172172 4290944 ~ 4291549 (+) True AMCG00014201
TU84895 other upstream 1395855 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other upstream 1395855 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other upstream 1395855 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other upstream 1395855 2709024 ~ 2710329 (+) True AMCG00014146
TU84815 other upstream 1976039 2126872 ~ 2130145 (+) True G67896
TU85565 other downstream 530428 4649200 ~ 4651964 (+) True G68475
TU85567 other downstream 530428 4649200 ~ 4651964 (+) False G68475
TU86015 other downstream 3227423 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 3294868 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 5884286 10003058 ~ 10008648 (+) True G69406

Expression Profile