RNA id: AMCG00014198


Basic Information

Item Value
RNA id AMCG00014198
length 1505
RNA type mRNA
GC content 0.47
exon number 3
gene id AMCG00014198
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 4223544 ~ 4227643 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGGCCACACGGCACTGCAGATCTCCAGATCACCGCTGCTCTGGAGCACCAGTCAAACGACAGGTTGCACATCGGTAGGTGTCATGTGACGATGGACACACGGGAGATCACTGATGGCGCTCATCACATAGAAAAACTTCTCAGAGAAAATAAGTATCCAGATATGATATCCCTGCTGGAGGACATAGACAAGTGGTCAGTTACAGTAGAGCAGCTTCAGGAAACAGATATCACTAAAGTGCTCTACAGGGTCCTGAAAACCTGCCCTGTGATTGAGTTGAAAAGGCAAGTGAAGCTTTTACTGTCAAAATGGAAGAAATTGTATGTTGGGTTTTGCTCTCAGACCTCGGCTCACCCTGCAAGAAGCGACAGCAAGGAGACGGTTTGTCCATCCTGTTTTAAGGCAGACACGAAGGAGACCGGCGCCATTTACTTTGCACAGTGTGAGAAGATCCGACCAGATTATAGCTCTAATGGTGGAGAAAGCAGATGTGAGCAGGAGAGTTTGTCTCTTCGTACAGTCGGTGGAAAGGACGCAGCCATGGGGGATCTTTCAGTTGTGGGTTGTGAGGGAAATGCCACACTGGTTAGCACTGAACCTGGCATAGTGGAGAGCTCCAGGACTGCAGAGACTTCTGAGGTGAACCTCGAGAAAGCCCAGATTAGTGTCGTCCCTGTGAGACCCAAATGCACCGAGCTGCTCTTTCAAGCTCTCCAGCCTGAAGGCGCTGAAGGGACAGAGTCCTCTGCGAAGTGTCAGGAAGTGGCCCAGGCTATCGAAGAGAGCATCTTTGTCCTGCACGGCAAGATGGACAAGAAATACAGATCTTGCATCAGGAGTAAAGTGGCTAATTTAAGGAACCCCAAGACTCCTCACCTGCGCCAAAACCTGCTGTGTGGCCGGATGAGTGCAAAGGCCTTTGCCGAGATGTCTGCGATGGAAATGGCAAGCGATGAGCTAAAGAGACTAAGGGAAGTGTACAGGCACTCGGCCATTAGTGAACATCAACTTCCGCAAAGGGTGGAAGGGACGAAGACCGATAAGATCCGGTGTAGGCGCTGTGAGAAGTTCGACTGCACTGTGACGGTCATCGCCAGAGGAACGCTTTTCCTTCCCAGCTGGGTACGGAATGGAAACCCAGATGAACAGATGATGACTTTTGTGATTTGTAATGCATGTGGAgagaagtggtacaacagtggATGGGTTTGTCTGTAACAACTGGCACAACCAGATGACGTAAAGTGGCAGCGTTTACATGCAAGTTTGATTTGTGTCAATGTTGTAACTTCAATCAGATTGAAATGGCTGAATTACAGACTAATCTTAAATTGGACGTGCTGTGAACAGTGCATGCTTACACAATGACTGCAAATGtggaataaaaatgtgttgataCTAATATCTGGTGAggattttgtcttttgtttccttttttttttttttgactgtTTGCATGTGTTTAGTGTTGCTTTATTTCACATGAGTTTGTAATGTTTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85370 lncRNA upstream 91826 4127476 ~ 4131718 (+) True AMCG00014196
TU85358 lncRNA upstream 139580 4083763 ~ 4083964 (+) True G68317
TU85329 lncRNA upstream 268279 3954366 ~ 3955265 (+) True G68292
TU85192 lncRNA upstream 739895 3410978 ~ 3483649 (+) True G68189
TU85168 lncRNA upstream 847755 3375585 ~ 3375789 (+) True G68167
TU85439 lncRNA downstream 65683 4293326 ~ 4293526 (+) True G68374
TU85441 lncRNA downstream 67174 4294817 ~ 4295819 (+) True G68376
TU85500 lncRNA downstream 273221 4500864 ~ 4550002 (+) True G68422
TU85517 lncRNA downstream 356831 4584474 ~ 4588428 (+) False G68434
TU85518 lncRNA downstream 356831 4584474 ~ 4588428 (+) True G68434
AMCG00014199 mRNA upstream 3420 4205155 ~ 4220124 (+) True AMCG00014199
AMCG00014196 mRNA upstream 93876 4127631 ~ 4129668 (+) False AMCG00014196
AMCG00014197 mRNA upstream 104772 4106184 ~ 4118772 (+) True AMCG00014197
AMCG00014195 mRNA upstream 124603 4088363 ~ 4098941 (+) True AMCG00014195
AMCG00014194 mRNA upstream 141640 4046971 ~ 4081904 (+) True AMCG00014194
AMCG00014200 mRNA downstream 15167 4242810 ~ 4244022 (+) True AMCG00014200
AMCG00014201 mRNA downstream 63301 4290944 ~ 4291549 (+) True AMCG00014201
AMCG00014202 mRNA downstream 70698 4298341 ~ 4316679 (+) True AMCG00014202
AMCG00014207 mRNA downstream 233132 4460775 ~ 4498956 (+) True AMCG00014207
AMCG00014209 mRNA downstream 293159 4520802 ~ 4548407 (+) True AMCG00014209
TU84895 other upstream 1513215 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other upstream 1513215 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other upstream 1513215 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other upstream 1513215 2709024 ~ 2710329 (+) True AMCG00014146
TU84815 other upstream 2093399 2126872 ~ 2130145 (+) True G67896
TU85565 other downstream 421557 4649200 ~ 4651964 (+) True G68475
TU85567 other downstream 421557 4649200 ~ 4651964 (+) False G68475
TU86015 other downstream 3118552 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 3185997 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 5775415 10003058 ~ 10008648 (+) True G69406

Expression Profile