RNA id: AMCG00014199


Basic Information

Item Value
RNA id AMCG00014199
length 1571
RNA type mRNA
GC content 0.54
exon number 12
gene id AMCG00014199
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 4205155 ~ 4220124 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACTAGAAGCGGCCGTGATGCCCAAAAGACACTACAGACAAATCTCATCTGGTAATCCGGCGGGAGTGTGCCGCTATGGGAGGAGACTGGAGTGTTGCTATGGCTGGAAGAGGAACAGTAAAGGACACTGCGAAGCTCTCTGTGAACACGGCTGCAAACATGGGGAATGCGTGGGCCccaacaaatgcaaatgtttccCGGGATACACTGGAAAAACATGTAATCAAGATCTGAATGAATGTGGCCTGAAGCCCCGTCCCTGCGAACACAGGTGCATGAACACGCATGGCAGCTACATGTGCTACTGTCTCAACGGCTACATGCTGATGCCCGATGGCTCATGTGCCAACTCCAGGACGTGCGCCATGGCCCACTGTCAGTACGGCTGTCAGGAGGTTCATGGAGAGGTGCGCTGCCTCTGTCCGTCCACAGGGCTTCAACTGGGACCAGATGAGAGGACCTGTATTGATGTTGACGAATGCTCGTCAGGAAAGCTTCTTTGCCCCTATAACAGGAGATGCGTGAACACATTTGGAAGCTACTACTGCAAGTGCCAGATTGGTTTTGATCTTAAATATGTCGCTGGCAAATACGACTGTGTAGACATGGATGAATGTGCAAGCAACACTCACAAGTGCAGCCCCCACGCGGAGTGCCTCAACACCCATGGATCCTACAAGTGCAAATGCAAGCCAGGCTTCAGAGGCAGTGGGTTTGACTGCTCTGCCATCCCAGACAACTCTGTGAAAGAAGGCCCACGGATTCTAGGCGGCGGCAAAGATCCCATCACGAAGCTCGTCGTGGACAACAACAGCGAGCTCGACAACGAGCAGATCAAGAATGTCATCCCTGAGTCCAAGGTCACCACGCCCCCCAAAGCCCGCCAGCAGCCATTCGATTACGAGGACGGCATCTACATCGGAGGGACTGTGGAAGAGAAGGAGCTGGATGACGTGTCCTTGGAGGAACAAGACAACCTGAAGAACCAAATAGAGAAGAAGGAGACCAGCCCAAGGGGAGACGTGTTCATCCCCGAGGAGTTCAAGTCTGTTCTCGGTCCTCTCACTGTGGCGAAGGAAGCCCCAGCCGTGGTGCACAGTCAGGAAGAGTTCATCATCGACTGTAGCTTTGAGCAAGGAGGCTGTGAGTGGGTGCAGGACCCCGAGGACAACTTTGACTGGAACGTAGCCGACCACGATAACGGTGTTGGATACTACATGGCCGTCCCTGGTTTCGTCGGTGAAAGGAAAGACGTCGGCCGCCTGAAACTCCTCGTGAGCGACACCACGTCTCAGAAGGGTTTCTGTCTGACCTTCAACTACCGCCTGATCGGAGACCGGGTGGGCAAACTCCGAGTGCTGCTGGACAACAACGACTATCCGATCTGGGAGCAGAGCACGAGCCGAGCGGAGAGCTGGCAAACCGAACTCATCACTGTGTCCTGGAATGATTCCGCTCCAGAGAGCATCATTTTCGAGGCCGAGCGTGGAAAAGGCAAAGCTGGGGAGATCGGGCTGGACAACGTTGTGTTAACCTCTGGGTCCTGTCAAGAAGATGAATCAGTCATTTTT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85370 lncRNA upstream 73437 4127476 ~ 4131718 (+) True AMCG00014196
TU85358 lncRNA upstream 121191 4083763 ~ 4083964 (+) True G68317
TU85329 lncRNA upstream 249890 3954366 ~ 3955265 (+) True G68292
TU85192 lncRNA upstream 721506 3410978 ~ 3483649 (+) True G68189
TU85168 lncRNA upstream 829366 3375585 ~ 3375789 (+) True G68167
TU85439 lncRNA downstream 73202 4293326 ~ 4293526 (+) True G68374
TU85441 lncRNA downstream 74693 4294817 ~ 4295819 (+) True G68376
TU85500 lncRNA downstream 280740 4500864 ~ 4550002 (+) True G68422
TU85517 lncRNA downstream 364350 4584474 ~ 4588428 (+) False G68434
TU85518 lncRNA downstream 364350 4584474 ~ 4588428 (+) True G68434
AMCG00014196 mRNA upstream 75487 4127631 ~ 4129668 (+) False AMCG00014196
AMCG00014197 mRNA upstream 86383 4106184 ~ 4118772 (+) True AMCG00014197
AMCG00014195 mRNA upstream 106214 4088363 ~ 4098941 (+) True AMCG00014195
AMCG00014194 mRNA upstream 123251 4046971 ~ 4081904 (+) True AMCG00014194
AMCG00014192 mRNA upstream 254878 3933258 ~ 3950277 (+) True AMCG00014192
AMCG00014198 mRNA downstream 3420 4223544 ~ 4227643 (+) True AMCG00014198
AMCG00014200 mRNA downstream 22686 4242810 ~ 4244022 (+) True AMCG00014200
AMCG00014201 mRNA downstream 70820 4290944 ~ 4291549 (+) True AMCG00014201
AMCG00014202 mRNA downstream 78217 4298341 ~ 4316679 (+) True AMCG00014202
AMCG00014207 mRNA downstream 240651 4460775 ~ 4498956 (+) True AMCG00014207
TU84895 other upstream 1494826 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other upstream 1494826 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other upstream 1494826 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other upstream 1494826 2709024 ~ 2710329 (+) True AMCG00014146
TU84815 other upstream 2075010 2126872 ~ 2130145 (+) True G67896
TU85565 other downstream 429076 4649200 ~ 4651964 (+) True G68475
TU85567 other downstream 429076 4649200 ~ 4651964 (+) False G68475
TU86015 other downstream 3126071 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 3193516 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 5782934 10003058 ~ 10008648 (+) True G69406

Expression Profile