RNA id: AMCG00014200



Basic Information


Item Value
RNA id AMCG00014200
length 894
RNA type mRNA
GC content 0.64
exon number 4
gene id AMCG00014200
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 4242810 ~ 4244022 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCGTCTCTGTAGAGGTCCAGCGGCCGACGCCCTGGCGGTGCAGGCAGCAGAGGTGGTGGCTCTGTTGGTGTCCCCGGTGTGCTGTGAGATCATGAAGCCCCCGATCCTGCAGTGCTGGAAAGGACACCTGCTCTGTAACGAGTGCTGGCCCCGGCTGGACTGTTGCCCGTGCTGCCGGGTGACGCTGCTGCCCAGAACCAGGAACATCGCCATGGACAGCATAGCGTCGCTACTCCACTTTGCCTCAGAGGTGAGTCCGGACACACACACCGCAGGCcctcctggaggagcccctgccCTTCTGGAGTTGCAGAGTGCAGGACACTCCGTGGCGGGGGGAAACACTGAGGACCCCCGGGCTGAAGAAACACAGATGCCTTTCTCCAGCGCTGCAACCGGGCGGCCCTACACCTCCAGGGGTGCTCTCAGGCTGTCCTCAATGCTGGGGGACCTGTGGTTCCAGTACTACCTGCGTCTGCAGAAGGTCCAGTGCAACGAGCTCTTGGGGGACAGCGCGGACCCCCGCACGGAGCTCCTGCATGCGGTGGGCTGCATGCTGTTGCGCCTGTGCCCCTTCGGCAGCCTTGCGCTGCAGTGCTCTCCGCCCCTGGACAGCCCATTGCCTCTGAGCACCCTGGACGAGGACCTGCAGATGAGGGTGTCCTCCGCCGTTTACAGCAGCCTGGTGCGTGCGGTGGCTGTcctggtggaggaggaggaagaggaggaggtggtggaggaTGAGAAGCagagcgaggaggaggaggtggtggtggaggatgaggaagaggaggaggagacgtGCACCAGCTCATCTGAGGCGTCCTCCAGCTCCAGCCAGTCTGAGGCCGCTGTGGGCCGGGTCTGTTTCGGCCGCACAGCTGTTGAGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU85370 lncRNA upstream 111092 4127476 ~ 4131718 (+) True AMCG00014196
TU85358 lncRNA upstream 158846 4083763 ~ 4083964 (+) True G68317
TU85329 lncRNA upstream 287545 3954366 ~ 3955265 (+) True G68292
TU85192 lncRNA upstream 759161 3410978 ~ 3483649 (+) True G68189
TU85168 lncRNA upstream 867021 3375585 ~ 3375789 (+) True G68167
TU85439 lncRNA downstream 49304 4293326 ~ 4293526 (+) True G68374
TU85441 lncRNA downstream 50795 4294817 ~ 4295819 (+) True G68376
TU85500 lncRNA downstream 256842 4500864 ~ 4550002 (+) True G68422
TU85517 lncRNA downstream 340452 4584474 ~ 4588428 (+) False G68434
TU85518 lncRNA downstream 340452 4584474 ~ 4588428 (+) True G68434
AMCG00014198 mRNA upstream 15167 4223544 ~ 4227643 (+) True AMCG00014198
AMCG00014199 mRNA upstream 22686 4205155 ~ 4220124 (+) True AMCG00014199
AMCG00014196 mRNA upstream 113142 4127631 ~ 4129668 (+) False AMCG00014196
AMCG00014197 mRNA upstream 124038 4106184 ~ 4118772 (+) True AMCG00014197
AMCG00014195 mRNA upstream 143869 4088363 ~ 4098941 (+) True AMCG00014195
AMCG00014201 mRNA downstream 46922 4290944 ~ 4291549 (+) True AMCG00014201
AMCG00014202 mRNA downstream 54319 4298341 ~ 4316679 (+) True AMCG00014202
AMCG00014207 mRNA downstream 216753 4460775 ~ 4498956 (+) True AMCG00014207
AMCG00014209 mRNA downstream 276780 4520802 ~ 4548407 (+) True AMCG00014209
AMCG00014208 mRNA downstream 324647 4568669 ~ 4583209 (+) True AMCG00014208
TU84895 other upstream 1532481 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other upstream 1532481 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other upstream 1532481 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other upstream 1532481 2709024 ~ 2710329 (+) True AMCG00014146
TU84815 other upstream 2112665 2126872 ~ 2130145 (+) True G67896
TU85565 other downstream 405178 4649200 ~ 4651964 (+) True G68475
TU85567 other downstream 405178 4649200 ~ 4651964 (+) False G68475
TU86015 other downstream 3102173 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 3169618 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 5759036 10003058 ~ 10008648 (+) True G69406

Expression Profile