RNA id: AMCG00014202


Basic Information

Item Value
RNA id AMCG00014202
length 3342
RNA type mRNA
GC content 0.55
exon number 22
gene id AMCG00014202
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 4298341 ~ 4316679 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCATCGCTGTGCACAGCTGACTGATCCTGAACACAGCTCTACCATCCCGAATACATCCTGAACACAGCTCTACCATCNNNNNNNCATCTCTACCATCCCGAACACAGCTCTACCATCCTGAACACAGCTGACTGATCCTGAACACATTTCTATCATCCTGAACACAGCTGACTGATCCTGAACACATTTCTATCATCCTGAACACTGCTCACTGATCCTGAACACATCTATATCATCCTGGACACATCTCTATCaccctgaacacatctcagtcATCCTGGACACATCCTGAACACAGCTCTACCATCCTGGACAAGATCAATGCACAGACTGCGGAGCTGGACAGGTTGAACATGGCCGCTGCTAAAGAGGAGATGATTTCACCCGATGAAATGAGAAAAAGGCTTTACCAGACTTTTAAGACTCGTGGTACGCAGCTCCGTAACCAGCTCATCCATGAACTGAAGCACCCGGTGCTGAGCGCAGAGGTGGCCCCCAGGCTGGTCCAGGCGGAAGCAGATTCAGTCTTCGTTCGAGCCTCCAACAGTCTGGTAGCGGATCACCTGCGCAGAGCTGGCTATGAATACACCCTGTCCGTTTTCTACCCTGAATTTTTTTTCTACAAGGGACCTTCTCCAGCTGATGAAGATCAGTCCTCGGTCAGCCCTCTACAAATCAATCGTTTTATGATGACTTTGCTCATCCAGCTGACGGACGATTACCTGAACAAGCAGAGCTGTGATGCAGAAACACAGACCGCCGCGACTCTGCAGTGCAGGGAATCGCTGGATATTGAGGTGGCCAAGCTGAAAatggaggagagggagaaatcGGAGAGAGAAATATCGGCGCTGAGGCGGGAAATTGAGAGGACCTACCAGAGCAAATCCGAGGCGCTGATAAGCCGGGAGAAGAACGCAATTGAGCGGCTGCAGAGACAGCACGAGATCGAAGAAAAGGACAGCTACGCCCAGAGACAAGCGCTGCTGAAAGAGATTGAAATCGTGAGGAGCAGAGAGGCAGAACTGAACCAGAGAATAGAAGCGTTTGAGATGAATTGCAAATTGCATGGAGAGAAGAACAGGGTTTCGGAGGAGGCTCTGAGACGGCGTGAGCTCGCGGTGAAAACCATCGAAGACACCTATGAGCAGCGACTGAAGAACGAGCTGCTCAGATACCAGCTGGAATTGAAAGAAGAATACcttaaaagaacagaaaaagtCACAGAAGATGAGAAAACGAATAAAGCTGAAGGCATTCGATTGCGGAAGGAGCTGGCGGCGATCAATTCCATGACGGAGGAACACAGACGGGCCTCTGCTGAGATGAAGCGCCTGCAGGTGGAACTGGACACGGCCCTGTCACAGATCTCTCTGCTGACGCAACAAAACAAGCTGCTCAGAGAGCGGCTGGAGGAGACGGCCGACTACCCGGCACTGAAGAGAGAGTGGCTGGAGCTCCAGGCCCAGCTCAGGCTGATGAAGAAAAACCTCGAAGAAGCTCAGGATGACAATCGTCATCTGAAAACAGAGTACCTGACTCTGCAGGCCGAGCTGAGGAGAGTGGAGAACTGCAGGAAGCTGGACGAGGAGGAGTTTGAAAGTCACAAACAGCTACTGGAGAGGCAGTTACAGAACGAGGTGGAGCGCTCGGCTCACCTGAAGACCCAGCTCCTGGAGTGCGAGGAGCGGACGCGGTGGCTCACCATCCACGCCGAGGACGTCAAAATGCAGCTGCGCCAGACACAGCTGGCTCTGGAGAACGAGGTTTTCCGCAACCCCAAGCCCTCTCTGGTCGACCGCTCGGTGCTGGACCTCAGTACTGACAAGATCGTGCCCCCTGACATTTATGTAGACGGGCCTTTTCTCCGGTCGGCGCACAACGGCTTTCTCTTTGACCCCGAGGGCCCTCCGAGACGCGGCAGGGCCCGCAGCGGCTCCCCGGACTCCGACGCCGAGCTGGTTGCCGAGGCCAAGGCAGGGATCagggagctggagaaggaggCTGAACTTCTGGAAGAGGCCTACAGGAACTACCGGCACCGGGCTGCCCTGATGGGTAGCAAGCCAGCAAAACCGCAGTCGCCCCAACAGCAGCCTTTCGGTCTCTGCAACCGGATCCCCTCCATCTCTCACCACCGAGTGACCTTCGCGGAGGAGACACCTCCTCTCCAGGACCTGGACTCGTTCCCTCTCAACGGAGCCGCGCTGGCGGAGCTGCAGAACCCGTACGAGGAGAGCTCCCCACGACAGCGACGCCTCTCTTCAACGCCACTCTCGAAGTCCGAGCGGCGGATCATGAAGAGGTCCACTGAAgATGAACTCCATTCCCATGATGCATCGGACTACCACTTGTCCGAGCGGCAGCTGTCCCCCATCCCTCCCCGAGAGCTCCCGTCCTCCTTCGCCTTGGCGTCTGAGCTCAGTCCCCCCGGCAGCCCTCCTTTGAGAAGCACCGCTCGAGAGGGCAGCAGTTCCCAAAAACAGCACAAAGATCTGTCCAGCTCAGGGTCTTCACCTCCTCCTGAAATCATATCCCTGCAGGACCTCACTGAACCATCAAGAGATCACAGCGACGTTGCCCAGCGGCTTGAGGGCCCCGCGCCCCATCCATCTGCCCGGGACGTGAATGGGCGCAGTGTGGCGGTGCCAGAGCCAGCGGATGGCACTTCGGAGCGAGGCCACGGACACGACGACCCAACCACTCCAGAGGACGATGGGCCgagagatgaggaggaggagagacgaTGGCAGCTGGAGAGGAAGGGACGCACAGAGAGGCGACTGCAAGAGAGACGGGAGGCCATGGCAAGGGAGCAGAGCGAGTTGGAGAGACTGGAGCAGGAGAGGCTCTCGGACGAGGCGCAGCAGCAGCATGAGCGCGTGGAAGAGGAAGTGGACATGGAGCCCAAAACAGAAGCCGAAAAGTCTGCCTCGATTGCTGATCCTCTGGAGAAGTACATGAAGATCGTCTTGCAGAACCAAGGACAGAGTCAGCAAGGacagAGTCCGGCAGAAGCAGCGCGAGAGCAGGAGAGCTCGGAGGCGGAAATACGGTCCGACGAGAGAGATGACAGcATCGCCGCCTTCTCGCATGAAGACGCCGACGAAGACTTCTGGTGAATCGGGCGTCCCGGATGCCCATGggtgaaaaatgtatgtacgtgtgtgtgttgtacaatGTCTGTAACACTGTAATTGTCCCTCTTCAGTGCTGTGTTGGTTTGTataaactgatgttttttttaacctgatCTTTGCGTTTAATCCACCCTGCAGTATTGTATCAAttggagtgtttatttttataacaccTCTGTGCTGTGGAAATAAAAGTCATGTC

Function

GO: NA

KEGG:

id description
K16480 OFD1; oral-facial-digital syndrome 1 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85441 lncRNA upstream 2522 4294817 ~ 4295819 (+) True G68376
TU85439 lncRNA upstream 4815 4293326 ~ 4293526 (+) True G68374
TU85370 lncRNA upstream 166623 4127476 ~ 4131718 (+) True AMCG00014196
TU85358 lncRNA upstream 214377 4083763 ~ 4083964 (+) True G68317
TU85329 lncRNA upstream 343076 3954366 ~ 3955265 (+) True G68292
TU85500 lncRNA downstream 184185 4500864 ~ 4550002 (+) True G68422
TU85517 lncRNA downstream 267795 4584474 ~ 4588428 (+) False G68434
TU85518 lncRNA downstream 267795 4584474 ~ 4588428 (+) True G68434
TU85563 lncRNA downstream 331031 4647710 ~ 4648213 (+) True G68473
TU85589 lncRNA downstream 468647 4785326 ~ 4785601 (+) True G68497
AMCG00014201 mRNA upstream 6792 4290944 ~ 4291549 (+) True AMCG00014201
AMCG00014200 mRNA upstream 54319 4242810 ~ 4244022 (+) True AMCG00014200
AMCG00014198 mRNA upstream 70698 4223544 ~ 4227643 (+) True AMCG00014198
AMCG00014199 mRNA upstream 78217 4205155 ~ 4220124 (+) True AMCG00014199
AMCG00014196 mRNA upstream 168673 4127631 ~ 4129668 (+) False AMCG00014196
AMCG00014207 mRNA downstream 144096 4460775 ~ 4498956 (+) True AMCG00014207
AMCG00014209 mRNA downstream 204123 4520802 ~ 4548407 (+) True AMCG00014209
AMCG00014208 mRNA downstream 251990 4568669 ~ 4583209 (+) True AMCG00014208
AMCG00014213 mRNA downstream 406975 4723654 ~ 4746002 (+) True AMCG00014213
AMCG00014214 mRNA downstream 521044 4837723 ~ 4851433 (+) True AMCG00014214
TU84895 other upstream 1588012 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other upstream 1588012 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other upstream 1588012 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other upstream 1588012 2709024 ~ 2710329 (+) True AMCG00014146
TU84815 other upstream 2168196 2126872 ~ 2130145 (+) True G67896
TU85565 other downstream 332521 4649200 ~ 4651964 (+) True G68475
TU85567 other downstream 332521 4649200 ~ 4651964 (+) False G68475
TU86015 other downstream 3029516 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 3096961 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 5686379 10003058 ~ 10008648 (+) True G69406

Expression Profile