RNA id: AMCG00014222


Basic Information

Item Value
RNA id AMCG00014222
length 8268
RNA type mRNA
GC content 0.48
exon number 8
gene id AMCG00014222
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 5595455 ~ 5607754 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCCGTCTTGGCGCTCTGTCCTTGGTGCTGATCGTGGCCATAGCGCTGCCACACGGGGGTCTCTCCTGCCCCCATCCCTGCGCCTGctacctgcccaccgaagtccaCTGCACTTTCAGATCCCTCATCTCCATCCCCGCCAGGATGCCGAAGCACGTGGAACGAATCAATTTAGGGTTTAACACTATTAACAAAATCACAGAAAGCTCTTTTGCTGGACTGAGAAAACTGGAGCTCCTGATGATGCATGGGAATGACATCCACGGCATCCCCAACGGGGCCTTTAGAGACCTCATGTCACTGCAGGTGCTGAAAATGAGCTACAACAAGTTGAAGGTTATCAGCGGACATACCTTTCAAGGCCTCTCGAGTCTGATAAGACTGCATCTCGATCACAACAAGATCGAGTACATTCAACCCGACGCTTTCCACGGGTTGACCTCGCTGCGCCTGGTCCATCTGGAGGGGAACgtcctgcagcagctgcacCCCGATACCTTCGCAACGTTCTCCGTcttgcagcattttaaaatctccACGGTCAAGCACCTCTACCTGTCTGAAAACAGCCTGACTACTTTACCGAGCAAGATGTTCAAAACAATGCCGCAGCTGGAGAACGTCTACCTGCACGGGAACCCGTGGACTTGCGACTGTGGGATGAAGTGGTTCTTGGAGTGGAATACGAATTCTGAAGGtgtcttaaaatgtaaaagggaCAAAGCATATGAGGGAGGCCAGCTGTGTCCAAAGTGCTCCACCCCAAAACAGCTGAATAACAAGGACATCCTCTTGCTGGATGATCTCTCGTGTCGCAGCCCCGTGATCAGTTTACCACGTAGGGAAAACGATGACACAAAGCGGGAGGACAGTGAGAGTGAAGTGCTTCCTCGGGAGCAATTCCAAGAGCCCTTCGGAGAAATGGCACTGAATTTGACAGATGAACACGGAAACAAAGTCAATCTGCAGTGTCACATCAGTGAGCCAGGAGACTCTACCAAGATACATTGGGATCATATTAATTCACAACAGATCTCTGTGAACATGACGCTGACACTCGACGTTGAATGCCCAATTGACCGCTTAAATTACGAGAGATTATGGAAGCTAATTGCATATTACAGTGAAGTGCCCGTTCATCTCGAGAGGGAGCTGATGCTGAGCAAAGAACCCAAGTTAAGTTTCCGGTACAGGCAGGACATTCAAAAAGATGCATATTATTATACAGGTgtgaaagcaaacattttatcAGAGCCATCCTGGTTAATGCAGTCATTTGTCAACATACAGCTGAACAGGCGACAGTCCTCTGCCAAGAATGTGAGGCTAATTCTCACCACTCGTGTTTCCCAAACGCTGGAAACGGAAGTTTCAAGGAGGCAAAAAAATAAGTGGGTCATGATAGAATCGAAAAACGACACCAGAACTGCGGTCAGTGCCATTGTAGGTAATTTGTGTCAACTGGACTGTACCATTTTGAGTTCTGGCGATCCTTCGATACAGTGGATGTTACCAGACGGGACTAAAGTGGAAGCACCTCATTTCAGCACAGACAACAGGCTTTCGGTTTCTAGCAATGGAAAGCTTACCATCAGATCAGTAGACCATTCTGACTCTGGCATCTACTACTGCATTGCACAGGTCAAGGCGGACCTGGATGTGTTGGCTTTCCGCCTATCTGTGGAAGAACATCCAGGCCCATCGTTAGGAGACGGAGGGGGTTCGGTGACTAAGTTTGTTGGTGAACCTATCTCTCTGCCCTGTGTTGCTTCAGGCATTCCAAATGCTCAACTCAGCTGGATTCTTCCCAgtaacaacattttacattttaaatcaaactcaTCCAGGGCTTATGTCTTTGGGAATGGTACTCTATTCATACCCCAGACCCAGATGACAGATACCGGATACTACAAATGTGTGGCTCTAAACCAACATGGTGTAGATTCGGTGGCAACTAAGGTAACTCTGAcgagaaagaaaatgacacaaTCATTTAGAAAGTTTCCCATGAGGCCCCAACCTGCCGCAGGTGGTCCCACCAAAATTAAAGTCTTCGTGAAAGATGACGAGGAGTCTTCTGGAGACGACAGTCTTCCAAAGCCCTCGGAAAGAGGATTGTCCAGCGGCATGGACTCACAATCTGTAAGGAGAGGTCCAAAAATGAACACACGTGGACCCCAACTCCGAAATTCAAGAAGAAGGTTAAAGGTGAAGAATGGATTAGGACGGCCAAAACAACCACAGGTAGAAGGCCAACGCACCTTTGagacacaaaggaaaataaacgtgtcaaaaaaaacaattgaccCACAACAATGGGCTGACATTTTGGCCAAGGTTCGTGAAAGAACCGTTTTGAGAACAACGCTGCCACCCACCGTATACAATAGCGCACCAGTAACTACACCATCTGAGAATGTTGTGAAGTTACAATCTTCAGATGTTACAGAGGGATCTTCTATAGATGACTCAAACCTCCAAGAGGAAGGCCTTTTTCCACTCACCACACCACAAAATCACATTAAACATGATGAGAATGACCTGGTTACAGAACCCACTCATACAGAAGATCAAACTAATACCTTTTACCAAATCTCTGCCCCTAAAACTAACATTGACTCATATGTTGTGACTTCCCGTACTCATATTTTACAGTCAACATCTGGGCCACAGAATACAAACTATGTTATTACAAAttctaaagaaaatgaacatgaGGCAAATACTTTAAGGACTAGTACACTGTATGAAATTGATGTACAAGGAAGCAGTGCTGTGGAAATAAATTCTCCTTACACCATGTCAGATGTCCCAATCAGATCCTCGAGAATAGAAAAGCCCAAAAGCAATGATCATACCAGTACCCCAACAAGCCCAAGTGAAGAGGTGATtgattacatattaaaattaacaCCATCTGTGCCCGCTGATACAAATAGTGTAGACTCTGAACAAATCACAGACAATGTAAATGTTGATGACCTTTccaaacttacaaaatacacagtTGAGGCAGCTGAACAAGATCAAATTAATGAACGAACTCAGGACAGCTCAGATCATCCACTATTAACAGCCAACATTCCACTTTCCACTACTGTAAGGACAACAGTGGCCAGTACAAGTGCTAGAACTCATCCACCCTCTACACATTCTAGACACCCATTATATTCCAGGAGGCGATTTGGTGGTAGAAGGAGACCCAATAGACTAAGACCAAGACCAAATTATACTGGTTTGTTTCCACGTATTCCCTCGGCAAATCCACAGCTTACAGTAGCATCTCCAACCAAAAGAGTGCCTTCGCTAGTGATCAACTTTCCAACACCATCTCCCAAATCACAGACACCAACAGTGGCGGAGACtacattgttaaataacaacaaaggGGGACCCACTATCGCAGCTCCACCTACAGTTAATTACTCTTCTAAAGACACATTGAATCAGATGGAAAATAGCGTTCCCGGGCAACGTGAGAACTCTAATTCAATGTCTATCAAACCCACTGTTGATCCCATAAATCAGGCTGCTCTTAAGAGGACCACCCCAGCCTCATACACTTTTATTAATACCGTATTACTAGCTACTGTGGTTCCAAAAAGTGCAACTTCATCTCCTTTCGAAGAGGgacatgaacaaataaatgaaccCAAAGTTCCTACTGAAGCATTTCCTACATCACTGCCAGGCCATGAAACTGCTTCATTGGCAACCCGTCAAAGGGAGTTTACAAGCCTCGGTCTTCCAACAGTAAAGATGTCTGGTGTTAGCCTCGATGAAAATGCTGCTGGAGTCATCAGTACTACACAAGGCTCTGGCAGGGTCTCACCTGCTTCTCACGTACAGTCGGGATTACAACCAGAAACTGGTTTCAACAAATTGGGCAATAAAAATCAACCCACGTCTTCAAGAGAAACGTCAGCCAAGGACAAAGGTGTAGAGAAACCGTTACCAATAAAGCCTCCACCCACCCCTTTGCCGAGCAGAACAACACAAAGCCAACACAAAGTCAAAATAGTACAAGATGCTCAAATCCCAAAGGTGAATGCAAAGCCAAACACGTATGTGGTGACAGACAAAAAGAAGGAAACATCATTGAATCATCAAATACCAGCGAGGAAACCTCATATATCAGGTAGTTtcaatcacagatctgttttgattaaaaacacagctgtcacAAGAAGACCTCCTGCTGTGTTCACCAGGGCCTGGGAGCAACAACTTTATATTTCCAGCAAACCAGAACCAGCAGAAACTGCAGAAAAAGCTCCATTGCCAAGGAAAAATGAAGTCGGTAGCAACAACAataccaccaacaacaacaaaaccaacaacaaaaccaacaaccacaaaaccaacaaccacaacaaaaccaacaaccacaacaacaaaaccaacaaaaccaacaacaccaacaacgacgacaacaacgacaacaacaaaaccaacaacaatgacaacaacaacaaaaccaacaatgacaacaacaaaaccaacaacaccaacaacgatgacaacaacgacaacaacaaaaccaccaacaacaattacatcaacaaaaccaacaacaacgacaacaaaaccaacaacaacaacgacaacaacaaaaccaacaatgagaacaacaaaaccaacaacaacaatgacaagaacaaaaccaacaacaatgacaacaacaacaaaaccgacaacaacaaaaccaacaacaacaacggcaACAACGACAAAACCAataacaacgacaacaacaacaaaaccaaccactataacaacaacaaaaccaccgacaacaacaacaaaaccaacaacgACGACAACGACAACAGCAACAGCTCCAAGACTGGACCTGCACACGGTTCTAGAAACTTTGGTTCAAATTACATTCCTGAAAGACCAGGACAAGGTGGACGAACGCCCACTATAAACCAGAGGTACCCATATTACCACAACAGCAGGAATCCTGTAATCCTGCACAGGCCAGGTCTCTTCCAGACACCTATGAGGACCAAACCACCCATCACGCCTGGAAGACCTCCCAGTGAATCAACGTCAGGTTCAGTCACCACTGCAAAACCCACTGCGCCTAAATCTACATCCGTAAACATAACCACAGCTGGGACAACACCAAGAAAGACAACCACCAGTCCTATGACGACCAGCTTAACAGCACTATCTACATCTCCGTTGACAGTCACAACTCAGATCCATCAGAATGAGGTTAATAAACAGAGACTCCCGTATTCTCCTTTCATCCCAAGAGTTCCAAGTAACACTCAGAATGTGTCCAGTGTTCCTCAGAGGCCCCCCAACGTACAGATCCACCGAGCGAGACCTAAAATCACTACAACTAATCTCCATTCAGTATCTGTGCAAGCTGAAATGGACGCTGTACTGCCCTGTGATTCAATAGGGGAACCTAAACCTTTCTTGACTTGGACCAAAGTTTCCACTGGAGCTGTGATGGCCCTGAATACGAGGCTCCAGAGGTTCGAGGTCCAGAAGAACGGGACTTTTGTTATCCGCAACGCCCAGCTTCAGGACCGGGGTCAGTACCTTTGCACCGCCCAAAACCAGTACGGCGTGGATAAAATGATGGTTACGCTGATTGTGCTTGCTCAGCAGCCGAGGATGATGCAACCCCGATACCAGGATATTACAGTTTACCTCGGAGACAGTGCCAACCTAGAGTGCAAGGCCCAGGGACTGCCAAACCCCCACATTTCATGGATGCTTCCAGACCATACGATGTTGCGTGCCGCCACCAGCACAGAGGGGCGGGTGATGTTATTGGGCAACGGGACTCTGAGAATTAAATTCACAAACTACCCAGACAGAgggatttataaatgtattgctaGCAATGCGGCAGGCGCGGACACCTTGTCTGTGAGGCTGCACATCGCCGCCCTGCCCCCCATGATCCAGCAGCCGCGGAATGAGAACTTCACCATCGCCGAGGGACAGGCAGTGTACGTCCACTGCACGGCCAAGGCGGCCCCCCAGCCGAGCATCCGCTGGCTTATCTTCGATGGCACGCAGATCCGGCCCTCACAGTTCGTGAATGGGAAACTGTTCGTGTTTCCCAATGGCACACTTTACATCCGCAACTTGTCACCAAGGGACAGCGGGAACTACGAGTGCATGGCCAGCAACACCGTGGGGGCGTCCCGGAGGAGCATCAGCTTGACCGTGAAGAAGAACGCCTCCACGGCCAAAATCACTTTGTCTTCTCCTCAGACAACGGATGTCTCCTATGGGGGTCAGTTGCGCCTGGACTGCTCGGCTTCTGGAGACCCAGGGCCAAGAATAATATGGAGAGTCCCATCCAAGAAGCTGGTGGATGCACAGTATAGCTTCGATCCCAGAATAATAGTCTACGGCAACGGCACCTTGGTCGTGCAGGCAGTCACGGAGAAGGATGAGGGAGACTACCTGTGTGTGGCCAGAAATAAGATGGGAGACGATTACGTGCTTCTAAAAGTAAGCGTGATGATGAAGCCGGCCAGGATCGAATACAAGCAGCAGGAGAACCACAAGGTGATGTACGGCGGAGACCTCAAAGTGGACTGCATAGCCTCGGGCCTCCCCAATCCCGAAATCAAATGGGCTTTGCCTGACGGTACGATGGTGAATAGCATCCTGCAGTCTGACGATAGCGGCGTCCGCACCAGGAGGTACGTGGTGTTCGACAACGGCACGCTTTTCTTCAATGAGGTCGGGATGAGAGAGGAAGGGGACTACACCTGCTATGCAGAGAACCAAATCGGGAAGGACGAAATGAAAGTGCGTGTGAAGGTGGTGGCGCATGTCCCCATCATCAAAAACAAGACGTTCTCCACTGTGAAAGTGCCGTATGGGGATTCGGTGGTGCTGAGCTGTAACGCGAAGGGGGAACCGACGCCTACCATCACCTGGCTCTCTCCCACCAACCGTATCATCCCAGCCTCCTCGGATAAGTATCAGATACACAAGGACGGGACGCTGCTCATACAGAAAGTCCAAAGGTTCGACAATGGCAACTACACCTGCACGGCCTTGAACAGCGCGGGGCAGGACAGGAAGATGACCAGAGTGGAAGTCTTGGTCTCTCTGCCCACCATCAATGGCATGAGAAGTGTGGTCAACACCATCAAGGAGACGGCCGTCAAGGAACAGCGGAAACTCTTGGACTGCCGGGCTGAAGGGATGCCACTGCCACGAGTCATGTGGGTTCTGCCGGAGAACGTTGTCCTTCCAGCTCCCTACTACGGGAGTAGAATAACAGTCCACCGCAACGGCACGCTTGACATCCGGTCGCTGAGGAAAACGGACTCGGTGCTGCTGATCTGTATCGCACGCAATGAAGGTGGCGAAGCCAGGATGAATGTGCAACTTGATGTCACAGAGAGCATGGAGAAACCTGAGCTGAAGAGCCCCAAAGCTGAGATGGTGGCCCTAACTCCTGGTTCCACAATAAGTTTAAACTGTTCTGCCGAAGGCCGACCGACTCCTGAAATCATCTGGATCCTGCCAAACGGTTCCCATCTTTTTAGTGGCAGCTATTATTTGAGATTCTACCACAGGCAGAATGGTACGCTCCACATCAGCAACGCCTCGGTCTCTGACGTGGGCTCTTATCGCTGCCTGGCCAAGAACCCCGCTGGGCAAGCCGAGAGGACCGTCTCCCTCGTCCTCAGGAAAAAGCCTGACATCAACAACAAGTACAACTCTTTGGTGAGCATCATTAATGGGGAAAATTTACAGCTGCACTGCTTGTCAGGAGGAAACCCACAGCTGTTTTGGATGCTTCCCAGTGGGACAGTTCTCACTCGGCCGCAGAAAATGGGACGCTATGCGGTGTGGCAAAACGGCACACTCACGGTCCAACAGGCCTCTGTGTACGACCGAGGAATGTACTCCTGCAAGACCGTGAATGAATATGGAACCTCGGTGCTGACTGTACCGGTGATAGTCATAGCATACCCCCCCCGGATCACCAACGGTCCACCACCCGTGACGTACGCTCGACCTGGAGTCGCAATCCAGCTGAACTGCAATGCCATTGGCATTCCCAAGGCGGAGATACTGTGGGAAATGCCTGACAAAACACACTTAACTGCCTCCACTAATGCACGGCTGTTTGGGAACAAGTATCTCCATCCACAAGGCTCTTTGATCATCCAGAACCCGTCCAACAGAGACACTGGGTTTTACAAATGCACTGCAAAGAATGTGATAGGAAGCGATTCAAAAGCCACCTACGTtcatgtgttttga

Function

GO: NA

KEGG:

id description
K24400 MXRA5; matrix remodeling-associated protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85636 lncRNA upstream 143934 5451288 ~ 5451521 (+) True G68538
TU85603 lncRNA upstream 738225 4857029 ~ 4857230 (+) True G68509
TU85589 lncRNA upstream 809854 4785326 ~ 4785601 (+) True G68497
TU85563 lncRNA upstream 947242 4647710 ~ 4648213 (+) True G68473
TU85518 lncRNA upstream 1007027 4584474 ~ 4588428 (+) True G68434
TU85659 lncRNA downstream 49496 5657250 ~ 5704009 (+) True G68559
TU85700 lncRNA downstream 171624 5779378 ~ 5782386 (+) True G68589
TU85751 lncRNA downstream 289316 5897070 ~ 5956185 (+) True G68623
TU85765 lncRNA downstream 404928 6012682 ~ 6013059 (+) True G68635
TU85767 lncRNA downstream 446781 6054535 ~ 6056347 (+) True G68637
AMCG00014221 mRNA upstream 45357 5508024 ~ 5550098 (+) True AMCG00014221
AMCG00014219 mRNA upstream 464810 5129171 ~ 5130645 (+) True AMCG00014219
AMCG00014220 mRNA upstream 477303 5114650 ~ 5118152 (+) True AMCG00014220
AMCG00014218 mRNA upstream 515672 5079509 ~ 5079783 (+) True AMCG00014218
AMCG00014217 mRNA upstream 533183 5061832 ~ 5062272 (+) True AMCG00014217
AMCG00014223 mRNA downstream 19 5607773 ~ 5643489 (+) True AMCG00014223
AMCG00014225 mRNA downstream 114143 5721897 ~ 5739921 (+) True AMCG00014225
AMCG00014224 mRNA downstream 147775 5755529 ~ 5774761 (+) True AMCG00014224
AMCG00014229 mRNA downstream 259151 5866905 ~ 5879257 (+) True AMCG00014229
AMCG00014237 mRNA downstream 425683 6033437 ~ 6054435 (+) True AMCG00014237
TU85565 other upstream 943491 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 943491 4649200 ~ 4651964 (+) False G68475
TU84896 other upstream 2885126 2706840 ~ 2710329 (+) False AMCG00014146
TU86015 other downstream 1738441 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 1805886 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 4395304 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 8729104 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 10067877 15675631 ~ 15679788 (+) True AMCG00014490

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU320520 True 930 lncRNA 0.47 1 NC_053135.1 20270484 ~ 20271413 (-)
mexican tetra (Astyanax mexicanus) TU320520 False 325 TUCP 0.41 2 NW_019170901.1 192861 ~ 193273 (+)