RNA id: AMCG00014237


Basic Information

Item Value
RNA id AMCG00014237
length 1506
RNA type mRNA
GC content 0.60
exon number 11
gene id AMCG00014237
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 6033437 ~ 6054435 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGCAGCAGGGAGAATCCAGAAGGTCCCATTTCCTCTCGTTCCTGTTGTCATTGACCGGtcatctctccctcttcctccctctctcgctccctctctcccaggtgTCTACGCTCCCACTCTTGCAGGCCGAGTACTCCAGCTGTGGAGAGAACGAGTTCTACAACCACACGAGTGGCAGCTGCCAGGCCTGTCCGCAGTGTCAGCCCGGCCAGGAGCCCAACCAGAGTTGTGGCTACGGTGTCCGGGACGAGGATTACGACTGTGTGCCGTGTCCGGCCGGGAAGTTCTCCAAGGGCAAGTACGAGATCTGCCGGCGGCACAAAGACTGCGATGCCCTGTACCGGGCCACCGTGCTGACCCCCGGCACCCTGGACAGTGACGCAGAGTGCGGGCCCTGTCTGCCAGGATACTACATCCCCGAGAACGGCCCGCAGAACATCTACGGGATGGTGTGCCACTCGTGCCAGAATGCCCCGCGCAACACCAAGGAGTGTAAGTGTCAGGCTCCTGTCACCACACCCAGGCGCTGGGAGCTCAGTCCTGCCACCACGCTCCTACCTCTGCTTGTGTTCCTTagatgcgtgtgtaTGCGCTCGGCCCCCGGCTCCTCTGGCATTTCCCCGGCAGTGTCCTCCACCAGCACCACCATGTTCCCTCACGCACACAAAGATTTGACGGGGCAGGGGCACCTGGCGACTGCTCTGATCATAGCCATGTCCACCATCTTCATCATGGCCATCGCAATAGTGCTGATCATCATGTTCTACATCCTGAAGGCCAAGCCCAACAGTCAAGCATGTTGCTCTGGTCCCTCAGTGAAGACCGTCGAGGCTCAGACCAACAAGCAAGAAGACAAGAAAGAGGTTCAAGAAAGCGTGGTGATATTCTCAGAGAAAGACGAATTCGACAAGCTCAAACCGACGGCACCGAAGACCGTTAAAAGCGAGAACGACGCATCCTCGGAGAACGAGCAGCTCCTGAGCCGCAGCGTGGACAGCGACGAGGAGGCGGCCCTGGAGAAGCAGGGGGCCACGGACCTGTGCCTGCTGTCGTTGGTGCACCTGACCCGGGAGAAGCCGTCCTCCGTGAACAGCAAGTCCACTGGGATTCAGAGTCGAAGGAAAAAGATTTTGGATCTATACACAAAAGCGTGCAGTGTGGCAGAAGGCCTCAGCCCCACGGAGCTGCCCTTCGACTGCCTGGAGAAGACCAGCCGCATGCTGAGCTCCACCTACAACACGGAGAAGGCGGTGGTGAAGACCTGGCGCCACCTGGCCGAGAGCTTCGGCCTGAAGAGGGACGAGATCGGGGGCATGACAGACGGCATGCAGCTGTTCGACCGCATCAGCACCGCGGGCTACAGCATCCCCGACCTGCTCACCAAGCTGGTGCAGATCGAGAGGCTGGACGCCGTCGAGTCGCTGTGCTCAGACATCTTGGGGGGCGCCGAGGGAGGCCCCCCCACCAGCCCGCCCATCTCGTCTCGCTGCGCCAGCGTCTGA

Function

GO:

id name namespace
GO:0060348 bone development biological_process

KEGG:

id description
K05162 EDAR; tumor necrosis factor receptor superfamily member EDAR

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85765 lncRNA upstream 20378 6012682 ~ 6013059 (+) True G68635
TU85751 lncRNA upstream 77252 5897070 ~ 5956185 (+) True G68623
TU85700 lncRNA upstream 251051 5779378 ~ 5782386 (+) True G68589
TU85659 lncRNA upstream 329428 5657250 ~ 5704009 (+) True G68559
TU85636 lncRNA upstream 581916 5451288 ~ 5451521 (+) True G68538
TU85767 lncRNA downstream 100 6054535 ~ 6056347 (+) True G68637
TU85787 lncRNA downstream 19282 6073717 ~ 6110306 (+) False G68649
TU85780 lncRNA downstream 52606 6107041 ~ 6110306 (+) True G68649
TU85783 lncRNA downstream 52606 6107041 ~ 6110306 (+) False G68649
TU85785 lncRNA downstream 52606 6107041 ~ 6110306 (+) False G68649
AMCG00014229 mRNA upstream 154180 5866905 ~ 5879257 (+) True AMCG00014229
AMCG00014224 mRNA upstream 258676 5755529 ~ 5774761 (+) True AMCG00014224
AMCG00014225 mRNA upstream 293516 5721897 ~ 5739921 (+) True AMCG00014225
AMCG00014223 mRNA upstream 389948 5607773 ~ 5643489 (+) True AMCG00014223
AMCG00014222 mRNA upstream 425683 5595455 ~ 5607754 (+) True AMCG00014222
AMCG00014243 mRNA downstream 180368 6234803 ~ 6239921 (+) True AMCG00014243
AMCG00014253 mRNA downstream 677189 6731624 ~ 6732517 (+) True AMCG00014253
AMCG00014259 mRNA downstream 985319 7039754 ~ 7046875 (+) True AMCG00014259
AMCG00014260 mRNA downstream 995901 7050336 ~ 7054907 (+) True AMCG00014260
AMCG00014261 mRNA downstream 1018889 7073324 ~ 7073602 (+) True AMCG00014261
TU85565 other upstream 1381473 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 1381473 4649200 ~ 4651964 (+) False G68475
TU84896 other upstream 3323108 2706840 ~ 2710329 (+) False AMCG00014146
TU86015 other downstream 1291760 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 1359205 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 3948623 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 8282423 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 9621196 15675631 ~ 15679788 (+) True AMCG00014490

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073717 True 1515 mRNA 0.54 12 NC_007120.7 56103173 ~ 56172757 (+)