RNA id: AMCG00014241


Basic Information

Item Value
RNA id AMCG00014241
length 4104
RNA type mRNA
GC content 0.53
exon number 12
gene id AMCG00014241
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 6059489 ~ 6108358 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGTATCGATCCCAGAAGCCTTTGCGCACGGTGTGGCGGAAGTGGGTCCCTGGGCGGAAACGCCGCGCACGTCACGGCAGGAGCTCCGGATTCAAACGGCTGCGCGCTGTCTGTGCCGGTAGACAGTCCTCGGACAGCGGCCCGGTGTTCATCGCGCACGGGGCTCGCTGCGGAGCTCACGATGAGTTTTGCAGAGGCGGCCGTGGATCTGGACATCACGGTGCAGAGGCTGAAGAAGAAGTACCTGGACCGCGGCCGGGTGGGCTTGTTCACTCCGTCTCACTGCAGTAGCGCGTCCAGTTCATTCCCTGCGTACGTCTCGCCAGAGCCTCGGATGCTGACCTCGGTGGAGAAGAAGTCTCCCGAGTCCGGCCTCAGCTACAGCGAGAGGAGACAGTATCGCAGAGCAATCCGGGAGCTTTACGAGACAGTCAGCCGCGGCTCGGACAGGCAGGACAGGACAGAGCAGTGCATGTTTAATGGCAGCTCGGCGGTCAGCGAGGAGGAGCTCAGTGGAGAGGAGGCTGTGGATGCGCTGGACACCAACTCACAGCTCTACACCGAGACGGACGTGACCCTGCCCTCGAACCTGGCGCGGGCCTCGGGCTCCCACGTGACCGACCCCCATGCGGACCTGAGGGCCGCGTGCCCCCGAGCAGAGACCCGGGAGAAGCGCTGCTCTCTGCCTCCCGAGATGGGCCAGGTGTACCGCGAGATGCTGCTCATCTACGACAAGCTGCAGCAACATCAGCAGGAAGTCAGACGACTCCAGGAGagcctgagagacagagacaaggaGAATAAGAGGCTGACGTCCTCCTTCGAGACCATGAAGGCCTTCAACGACACTGTGAAGAAGCAGCTTCATGATGTCAGCGAGCAGAACAAAAGGCTGGAGAAGCAGGCGAGGAGCGTACAGGCCCGTCTGGAGAACTTGCAGCGGAAGCACGAGCTCTTGGCGGTGCAGAGGGGGCGAGAGAACATCCCCCCCGGCGGCCAGGACGTGAAGCGGGCGAGACGAGACCAGGCGGCCGCCGGGGCGCGACCAGCCAAGCCGCCCCCGAGCCCCGCTGTGTATGAGGCGCTGGCCGCCCTGCTGGACTGGGTCGTGGATCTGCAGCTCCGCCATCTACCCCCCCGAGACGGAGGAGACGACAGCCTGGCGCAGGAGAGGTGTTCAAAGCTGTTGCCGATGCTGACCGAGCAGCTGCAGTCGGGTCCGGCCGTGAGCGCCAGTCTCCACGTGCCGCTGGTCAGATTCATCTACTGGGCTTTGAGGCAGCTGGAAAACACCCCCCAGCACAACACCCTGACCTCCACCATGAGACGGCTGGGCGAGGAGGCCTACCGGGGGGCGGCTCCGCGCAGAGGACGAGGCGGCTCCCCCGACCGCGGCCACGAGGGCAAGCCGGCGACCGCGGCCTTCTTCAGAAGCCCCAGCCTCCACGTGAGGTTCCTGTCCACCCTCATCGTCCTCAAAACAGTCTCTCAAGGTGAGGCAACATGGCCGCAATGACCCGACGGGCCCGATCTCTCCTGCCAATGTGTTCTCCTCGTCCATCGATGCCAGCTGGACCGGCCGAGGAAACGCTACACCCTCTGTGATTGATCACTGTTGGCTCTCGTCTTGGGTGCAGCTCCCAGCCAGTCAGTCTTGTTTTAAGTAGACGGACGTCTCCAGGGTTTCTGGACGCCTTCCTGCAGAGCTGCAGCAGTGAGTCGTGTTTCCGGACCCTCTCCCTCCTGCTGCGCCAGCCCAGACTGGATGTCCCGCTGCTGGAGAAGATCAGCGTCCTCCTCCAGAAGCTCTCCAAGATCAAGAGGAACAAGCGGCTGTTCGAACTCTCGGGCATCCATCTCGCCGTGCAGGAGATGCACCGCACGGCCGACCCGGCGCACACCTTCCTCACCATCAACCTCAACTCCATCCTCTACAACCTGGGCCTGCTGAAGAGAGAGTCTAGGCCCCTCAGGTTTGCTGGCCCAGCATGTGAGCGTCTGGAGAAGCGTTCAGATGAGCTTTAATGTCTCAATTCGGTGATTTGCACCCCCGTGTGATCTGACTTCAGTTCTGGGAGGCCGGGAGTGATGTCTTCTTCTGGGTTTGGGATTTGTTAGTGGGGAAATGTAATCCTTTTTACTCATAGTAATTCTTTTTTACCGTAACTCTTTGGTTTCCCCCGTTTCCTCCCGGTAATCGACGTGTTTTCACAATGCCTTGTTCTTGCTTGATATTATGCAATGGATGTGGCTGACGCTTAATCAAAACAAGACCGTTCTGGAGACAGAGATGTTTTTGAAGTGACAGTGAACAGGCATTTAACTGCATCAAGATTTTCCCGTTTTCCATACTAATTCCCCCCCACCTACTAGTTTTGCTGCCTCTCATTGGTGtgcgtttgtttttttgtcgAGTGCCTCCCCGTTGCTCTCGTTTGACTGAGCTGAAGAACTGACTCTGCTCCCGTCCACCTCCGTGAGATGGTTTAAAGTCCCTAGTTTCATAAAGTCCTCCTTCTACTTCTCCCccaagtaataataaaaaaaaaactcctggGGACAGCTTTATCTGAcctagttaatttaaaaacaaagaccttCCACAGCttctgtcccaacttttttattaattattcagcaAAGCATCTCTCCTAAATCCCTTATCAATTAATTCACCGCGTGCCGAGAGCGTTTTCTGTGCTCGTTAGGGTTTGATGTATAACGGGACGTTTCTTTAATTGCAAGACAAGGCGGGTATGGTAATCAAGCGCTCGATCATAGGAAGCACCGGCGATGGTTAGAAATCCTTCACGTCCTGCTGCAGAGGAAGACGGTGATTTTAATTTGTCTCTGGTTTGATTTGATTGGCTGACTATTCTTTAATATCTCCGGTAGTAATCCAGTTAATAAATCAGAGTGAATGTAGGTATCAGTAGGCAGTTATACAGGCATTTTCCTTAACCTGACTGGCTGATGATCAAGATGATAGacagttaatttagttttaataccGATTTAATGGGTTTGTTTTGGAACGCTGTCCCTGTTCCAACATATGTGGTCTGTCTTGAACAATGTGTTTGGACAGGATCGCAGCTGTTGTGTGTCGGATGCCGAAATCAGCGCTGGGACCCTGGACTTAAGAGCCCGATAGCCATTAAATCTTGAGTTGTGTCCCGAGCTTTTTGGGATGTGGTGATGGTTTAATAGTCTCTCATTCTGAGCCGTCGCCAGTTCTGCTTGAGCTCTGAGTCCAAAGATATGTTGTGTTCTCAGACGTTAAGGGACTTCCCTTTAAATCTCCAGAGTTTTCCCAGTTTGGGCCAAAGCAACGTGGACAAGTATTggttttattaaagaaacaacaacaacagacttTTTCCTTTGTGCGATGGATTTGTTATTCTTTAGAGATCGGTTGCCTCATCCTGAGACATCTTAATGGATTGGTGCTGTAAATAACGGGTGATATATCAAATCTCATTGTTAAAACTCatcaatttatgtttttttttgcagttaaaGTCATTAGAGTTTGAGTGGGTCTCCCAGTCGTCCTTCAAgaccacacactcacacgtgTGCCGGACAATACAAACTCGCAGCAGATGAAGTATTTATTCTGGGTTCGGTTCGCTGCTCCTTCCCaggtctgtctctgtcctctcgGCTCTGCGGGAATCCCATCATGAGGTCTGGGTTTTGTGGCAGGGTATGTGCCCCCAATAAAGCTTTCCTCAAAGACCACGGCCCCGATTCACTTTCAGCCACTGGCAGTCAGTCCAATCTGTGTCAGCGCTTTACTGTCCAAACGATGAACATCTCTGTCAACAGGCCTAGATAGAGACTTGAGTGACATTTGCTGTCAGTGCCTGAGCTTTCTCTTCTCCATGAtctactctctctctgtcccctgtcccctgtcTCTCTTGTTATCTGATAAGCAGCCATGAAATCATGAAGTTGTGGGCTATACTGACACAGACACTTCGTGGGAGTGTGTTTTtaccagtttttgttttgcacattttattgcTCCCGAATGTCACTGTAAATAGTGTCGTGACTCTTCCTCATTAAATATCTCGTCAACAGCTATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85835 lncRNA downstream 3158 6054111 ~ 6056331 (-) True G68680
TU85711 lncRNA downstream 233560 5825504 ~ 5825929 (-) True G68595
TU85704 lncRNA downstream 277097 5779485 ~ 5782392 (-) True G68590
TU85691 lncRNA downstream 349409 5709818 ~ 5710080 (-) True G68581
TU85674 lncRNA downstream 355562 5657305 ~ 5703927 (-) True G68572
TU85829 lncRNA upstream 25162 6107039 ~ 6108358 (-) False AMCG00014241
TU85889 lncRNA upstream 452603 6534480 ~ 6534701 (-) True G68722
TU85891 lncRNA upstream 598148 6680025 ~ 6680288 (-) True G68724
TU85931 lncRNA upstream 908726 6990603 ~ 6990867 (-) True G68757
TU85943 lncRNA upstream 962248 7044125 ~ 7045812 (-) True G68767
AMCG00014238 mRNA downstream 55261 6003637 ~ 6004228 (-) True AMCG00014238
AMCG00014235 mRNA downstream 148089 5908142 ~ 5911400 (-) True AMCG00014235
AMCG00014234 mRNA downstream 153236 5896567 ~ 5906253 (-) True AMCG00014234
AMCG00014236 mRNA downstream 165543 5893211 ~ 5893946 (-) True AMCG00014236
AMCG00014233 mRNA downstream 168238 5886471 ~ 5891251 (-) True AMCG00014233
AMCG00014240 mRNA upstream 1510 6083387 ~ 6104883 (-) True AMCG00014240
AMCG00014242 mRNA upstream 27482 6109359 ~ 6124346 (-) True AMCG00014242
AMCG00014239 mRNA upstream 63731 6145608 ~ 6163757 (-) True AMCG00014239
AMCG00014244 mRNA upstream 124051 6205928 ~ 6212795 (-) True AMCG00014244
AMCG00014246 mRNA upstream 139120 6220997 ~ 6222712 (-) True AMCG00014246
TU85055 other downstream 3230345 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 3415582 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 3516792 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 4141307 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 4156874 1900640 ~ 1902615 (-) True G67832
TU86038 other upstream 1296211 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 1335721 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 2055454 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 2074352 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 2301408 8383285 ~ 8384224 (-) True G69156

Expression Profile