RNA id: TU85822


Basic Information

Item Value
RNA id TU85822
length 2605
lncRNA type sense_over
GC content 0.45
exon number 2
gene id AMCG00014241
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 6059489 ~ 6108358 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTCAGAACGATTAGATGAGTCTCTAATCTGGAAaatctcctctggtttgatttCACTGGGAAATGTAAAGCAGCAAATGATAAACACTTCGATATTTAAGGATTAtttaaggtgtgtgtgtgtgtgtgtgtgttttaaactaGACACTGAAATAAAGCTCATCCCCGCTCCTCTCTCACTGCGTCTCCAGGGTTTCTGGACGCCTTCCTGCAGAGCTGCAGCAGTGAGTCGTGTTTCCGGACCCTCTCCCTCCTGCTGCGCCAGCCCAGACTGGATGTCCCGCTGCTGGAGAAGATCAGCGTCCTCCTCCAGAAGCTCTCCAAGATCAAGAGGAACAAGCGGCTGTTCGAACTCTCGGGCATCCATCTCGCCGTGCAGGAGATGCACCGCACGGCCGACCCGGCGCACACCTTCCTCACCATCAACCTCAACTCCATCCTCTACAACCTGGGCCTGCTGAAGAGAGAGTCTAGGCCCCTCAGGTTTGCTGGCCCAGCATGTGAGCGTCTGGAGAAGCGTTCAGATGAGCTTTAATGTCTCAATTCGGTGATTTGCACCCCCGTGTGATCTGACTTCAGTTCTGGGAGGCCGGGAGTGATGTCTTCTTCTGGGTTTGGGATTTGTTAGTGGGGAAATGTAATCCTTTTTACTCATAGTAATTCTTTTTTACCGTAACTCTTTGGTTTCCCCCGTTTCCTCCCGGTAATCGACGTGTTTTCACAATGCCTTGTTCTTGCTTGATATTATGCAATGGATGTGGCTGACGCTTAATCAAAACAAGACCGTTCTGGAGACAGAGATGTTTTTGAAGTGACAGTGAACAGGCATTTAACTGCATCAAGATTTTCCCGTTTTCCATACTAATTCCCCCCCACCTACTAGTTTTGCTGCCTCTCATTGGTGtgcgtttgtttttttgtcgAGTGCCTCCCCGTTGCTCTCGTTTGACTGAGCTGAAGAACTGACTCTGCTCCCGTCCACCTCCGTGAGATGGTTTAAAGTCCCTAGTTTCATAAAGTCCTCCTTCTACTTCTCCCccaagtaataataaaaaaaaaactcctggGGACAGCTTTATCTGAcctagttaatttaaaaacaaagaccttCCACAGCttctgtcccaacttttttattaattattcagcaAAGCATCTCTCCTAAATCCCTTATCAATTAATTCACCGCGTGCCGAGAGCGTTTTCTGTGCTCGTTAGGGTTTGATGTATAACGGGACGTTTCTTTAATTGCAAGACAAGGCGGGTATGGTAATCAAGCGCTCGATCATAGGAAGCACCGGCGATGGTTAGAAATCCTTCACGTCCTGCTGCAGAGGAAGACGGTGATTTTAATTTGTCTCTGGTTTGATTTGATTGGCTGACTATTCTTTAATATCTCCGGTAGTAATCCAGTTAATAAATCAGAGTGAATGTAGGTATCAGTAGGCAGTTATACAGGCATTTTCCTTAACCTGACTGGCTGATGATCAAGATGATAGacagttaatttagttttaataccGATTTAATGGGTTTGTTTTGGAACGCTGTCCCTGTTCCAACATATGTGGTCTGTCTTGAACAATGTGTTTGGACAGGATCGCAGCTGTTGTGTGTCGGATGCCGAAATCAGCGCTGGGACCCTGGACTTAAGAGCCCGATAGCCATTAAATCTTGAGTTGTGTCCCGAGCTTTTTGGGATGTGGTGATGGTTTAATAGTCTCTCATTCTGAGCCGTCGCCAGTTCTGCTTGAGCTCTGAGTCCAAAGATATGTTGTGTTCTCAGACGTTAAGGGACTTCCCTTTAAATCTCCAGAGTTTTCCCAGTTTGGGCCAAAGCAACGTGGACAAGTATTggttttattaaagaaacaacaacaacagacttTTTCCTTTGTGCGATGGATTTGTTATTCTTTAGAGATCGGTTGCCTCATCCTGAGACATCTTAATGGATTGGTGCTGTAAATAACGGGTGATATATCAAATCTCATTGTTAAAACTCatcaatttatgtttttttttgcagttaaaGTCATTAGAGTTTGAGTGGGTCTCCCAGTCGTCCTTCAAgaccacacactcacacgtgTGCCGGACAATACAAACTCGCAGCAGATGAAGTATTTATTCTGGGTTCGGTTCGCTGCTCCTTCCCaggtctgtctctgtcctctcgGCTCTGCGGGAATCCCATCATGAGGTCTGGGTTTTGTGGCAGGGTATGTGCCCCCAATAAAGCTTTCCTCAAAGACCACGGCCCCGATTCACTTTCAGCCACTGGCAGTCAGTCCAATCTGTGTCAGCGCTTTACTGTCCAAACGATGAACATCTCTGTCAACAGGCCTAGATAGAGACTTGAGTGACATTTGCTGTCAGTGCCTGAGCTTTCTCTTCTCCATGAtctactctctctctgtcccctgtcccctgtcTCTCTTGTTATCTGATAAGCAGCCATGAAATCATGAAGTTGTGGGCTATACTGACACAGACACTTCGTGGGAGTGTGTTTTtaccagtttttgttttgcacattttattgcTCCCGAATGTCACTGTAAATAGTGTCGTGACTCTTCCTCATTAAATATCTCGTCAACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85835 lncRNA downstream 3165 6054111 ~ 6056331 (-) True G68680
TU85711 lncRNA downstream 233567 5825504 ~ 5825929 (-) True G68595
TU85704 lncRNA downstream 277104 5779485 ~ 5782392 (-) True G68590
TU85691 lncRNA downstream 349416 5709818 ~ 5710080 (-) True G68581
TU85674 lncRNA downstream 355569 5657305 ~ 5703927 (-) True G68572
TU85837 lncRNA upstream 10675 6073171 ~ 6075910 (-) False AMCG00014241
TU85829 lncRNA upstream 44543 6107039 ~ 6108358 (-) False AMCG00014241
TU85889 lncRNA upstream 471984 6534480 ~ 6534701 (-) True G68722
TU85891 lncRNA upstream 617529 6680025 ~ 6680288 (-) True G68724
TU85931 lncRNA upstream 928107 6990603 ~ 6990867 (-) True G68757
AMCG00014238 mRNA downstream 55268 6003637 ~ 6004228 (-) True AMCG00014238
AMCG00014235 mRNA downstream 148096 5908142 ~ 5911400 (-) True AMCG00014235
AMCG00014234 mRNA downstream 153243 5896567 ~ 5906253 (-) True AMCG00014234
AMCG00014236 mRNA downstream 165550 5893211 ~ 5893946 (-) True AMCG00014236
AMCG00014233 mRNA downstream 168245 5886471 ~ 5891251 (-) True AMCG00014233
AMCG00014240 mRNA upstream 20891 6083387 ~ 6104883 (-) True AMCG00014240
AMCG00014242 mRNA upstream 46863 6109359 ~ 6124346 (-) True AMCG00014242
AMCG00014239 mRNA upstream 83112 6145608 ~ 6163757 (-) True AMCG00014239
AMCG00014244 mRNA upstream 143432 6205928 ~ 6212795 (-) True AMCG00014244
AMCG00014246 mRNA upstream 158501 6220997 ~ 6222712 (-) True AMCG00014246
TU85055 other downstream 3230352 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 3415589 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 3516799 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 4141314 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 4156881 1900640 ~ 1902615 (-) True G67832
TU86038 other upstream 1315592 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 1355102 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 2074835 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 2093733 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 2320789 8383285 ~ 8384224 (-) True G69156

Expression Profile