RNA id: TU85829


Basic Information

Item Value
RNA id TU85829
length 1249
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id AMCG00014241
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 6059489 ~ 6108358 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agagagagtgtgagagcgagtgtgtgtgtgtgtgtgtgagagtgagagagagagtgtgagagcgagtgtgtgtgtgtgtgtgtgtgtgagagagtgtgtgtgtgagagtgagatagagagtgagagagtgtgtgtgtatcgcAGAGATTTGTAACacccaaagaaaaataatggacTGGACGTCTGTCCTCTAAATATGACACATTATCTATTAGTGCCTCTTAAAGTAGACTGTTTCTATCTATATCTTTATAAACTGCTATTTTTCCTGCATGGTTTTATATCTGTTTATACCCTCTTTGTTTCTTGTGCCTTATCAGTTTTATATCTATTGCCTAGTGGCTATTAGCAATACTGTGTGAGCGCGGCCTGCTGTGTTTCGGCAGCCTGTGTTTTGGTGGTCAAAGTTATATTTGTACTTTAGCATTCGACAGAAACTGCCTTAGTAATGAATCCAAACCGTTAAACCCCCATTGATGTGGAGACATTCAAATCatacaaaatgtcaaatacaaattctcaggattttaagcctttttttctttttaaatagccAACATCAAGTATGGTTTACCTGTCATGGACTAAAGCTACACTTAATTATAATCATAAGTGTGTTTCTGTAGAAAACATCAAGAGAATTACCCATTAAGAGAGTTCGTAGTCTGGGTAAACATCAGGGGACGTAGGATAATGATGAAGACAAGAAGAGccaaaaaagaaatacacagtgACAATCACCAGTTTAGTTGAATGATTTCGGGAGCTGACAGTATTTAAACTGCCTGTTGTGTAGATTGAGTACAGGTACACACATCCCAGTGCCAGGATGAAAAATGTCAGCGTATTATGCAAAACAGTACAAACTTGTGTCTTATTGATGTCTCACTCATTTGTTATAGTCTAATCATTTGCTCGTGGTTTATTTTCACTGCCAGCTGCCGCCGACACTAATTCAAATAGGTGTGAATGTGTGACACAATGACACGCATcgacattataataaaatactaatgaTAGTGGGCAATATCAGTCCTTTCCCTGAATGCAGGACTATTGCAGAATGGATTCATTGTTACTGAACTGTATGCATGTTCTCAGCGCAGATGATGTCACgtaacatgttttgtgtttgaaagcTGTTCCGCTGTCTTGCAATTGTTTGTGTACTCGACACTGCTCACTGTCTTGAGTTGTTGTAGTGTGTGTTGTGCAATtcaagtattaaataaaatctatatattgtCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85837 lncRNA downstream 31129 6073171 ~ 6075910 (-) False AMCG00014241
TU85822 lncRNA downstream 44543 6059496 ~ 6062496 (-) False AMCG00014241
TU85835 lncRNA downstream 50708 6054111 ~ 6056331 (-) True G68680
TU85711 lncRNA downstream 281110 5825504 ~ 5825929 (-) True G68595
TU85704 lncRNA downstream 324647 5779485 ~ 5782392 (-) True G68590
TU85889 lncRNA upstream 426122 6534480 ~ 6534701 (-) True G68722
TU85891 lncRNA upstream 571667 6680025 ~ 6680288 (-) True G68724
TU85931 lncRNA upstream 882245 6990603 ~ 6990867 (-) True G68757
TU85943 lncRNA upstream 935767 7044125 ~ 7045812 (-) True G68767
TU85949 lncRNA upstream 945573 7053931 ~ 7054306 (-) True G68773
AMCG00014240 mRNA downstream 2156 6083387 ~ 6104883 (-) True AMCG00014240
AMCG00014241 mRNA downstream 25162 6059489 ~ 6081877 (-) True AMCG00014241
AMCG00014238 mRNA downstream 102811 6003637 ~ 6004228 (-) True AMCG00014238
AMCG00014235 mRNA downstream 195639 5908142 ~ 5911400 (-) True AMCG00014235
AMCG00014234 mRNA downstream 200786 5896567 ~ 5906253 (-) True AMCG00014234
AMCG00014242 mRNA upstream 1001 6109359 ~ 6124346 (-) True AMCG00014242
AMCG00014239 mRNA upstream 37250 6145608 ~ 6163757 (-) True AMCG00014239
AMCG00014244 mRNA upstream 97570 6205928 ~ 6212795 (-) True AMCG00014244
AMCG00014246 mRNA upstream 112639 6220997 ~ 6222712 (-) True AMCG00014246
AMCG00014249 mRNA upstream 118343 6226701 ~ 6228443 (-) True AMCG00014249
TU85055 other downstream 3277895 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 3463132 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 3564342 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 4188857 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 4204424 1900640 ~ 1902615 (-) True G67832
TU86038 other upstream 1269730 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 1309240 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 2028973 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 2047871 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 2274927 8383285 ~ 8384224 (-) True G69156

Expression Profile