RNA id: AMCG00014268


Basic Information

Item Value
RNA id AMCG00014268
length 3553
RNA type mRNA
GC content 0.48
exon number 6
gene id AMCG00014268
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7240284 ~ 7254356 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTCACGGCCTGGTGACGCGCTGTCATGTGAGCAGCGGGCGAGTTCCTGCCGGGACAGAACCAGGAAATAGGACCGTAAACACCGCGCCGCACGGACGGGCGCCGGCTGCTCAGCACTGCACTTCGTTTCTCGGCCTGCTTTCCAACGCGCATCGGTCCAGTTTATCCCTCTCCGTGTGCTCCCGTCCCTGCTGTGCTGTCTTGTCTCCAACCCGCTGAAAGCCATGGCTTCGTTGTTCAAAAAGAAGACGGTCGACGATGTCATCAAGGAGCAGAACAAGGACTTAAGAGGAACCCAGAGACAAATCGCCCGCGACCGAGCGGCGCTGGAGAAGCAGGAGAAACAGCTGGAAATGGAGATTAAAAAGATGGCCAAGACGGGCAACAAGGACGCCTGCAAAATCCTGGCCAAGCAGCTGGTGCAGCTCCGCAAGCAAAAGAACCGCACGTACGCCGTGAGCTCGAAGGTCACCTCCATGTCCACGCAGACCAAGATGATGAACTCCCAGATGAAGATGGCGGGGGCCATGTCTACCACGGCCAAGACAATGCAGGCCGTCAACAAAAAGATGGACCCGCAGAAGACCTTGCAGACGATGCAGAATTTCCAAAAGGAGAACATGAAGATGGGGATGACGGAGGAAATGATCAGCGACACACTGGACGACATCTTCGACGAGTCCGGAGACGAGGAGGAATCGCAGGACATCGTGAACCAGGTGCTGGACGAGATCGGCATCGAAATCTCTGGCAAGATGGTGAACGCGCCGTCCGCCGGCAGGAACCTGCCCAGCGCTGCCGCCAAGACCGCCACCATCTCGGACGAGGAGATCGAGAGGCAGCTGAAGGCCCTGGGAGTGGATTAACCACCGGAGAGAAGTGCCTCTTAAAACCCGAGCAGATGCTTTTTAGTCttgtttctcttctttttatttttcttccatggACTGTATCTGTGGCAACCGAGGGCATCTCAGAATGAGTAATTAccaaattaaagaaatgtaaatttatTCCTAATCTTGattaacacaatgtttttttgtttttttgcccgTTGGCTTTTGTGTTGTGCTGAATTGtgaaagaggagaggagggagagatcGGCCCTCACCTCACAGAAGCTGACGCCCCCCCTGTTTAAAAGCCACTCGATACTTTCCATGTATTCTAGAAACAGTATATGCAACGTGGGCGTGGCAGGCGCTGTGTATGGACTGACGTACCACTGTGCCAGTTAGCAAGACGCCCCCTGGAGGGCGGGGTCCCAGACGCCCTTCACTGCCGCCGCGCTTGTAAAGGTCTCATCTGCTCCTGACGCACGCAGGAGATTATAGCACCCCCTATAGATGCATATTgtatgggggagggggggtatttaacttatttaggcttttaagttttgttttgcatggtgTGGAGGACGGAGTGTACGTTTCACAGGGTCGGTTCCTCGTCTTCCCCCGTTCGTCGCCTCAGAATGCTGTGAATTGTAATTTGCAGATCGTGTCATATTCCCATCGGCTCTGTCAGTAATTCTGCCCTAGGTGAAGGGTCTCGTCTCAAAGCTGCTGACGTGAATAATGATAGAAGCCGACCCAGCAGTCTTCCTCCTCACGTCTGCAATTGTAAGACGTAATAATTTGACGAGAACTTCTGATTCTGAAGTGCTGATTCTAAGATTTCGAGGATCATGGTATCAGTGAAGGCTTATATTAATTCTGTGGATCTGAGCTAcaggtgtattttttttttgtattcatcttCTGTCGGACTCTTGATGGCAGCTGCTCTGGAATCGTTGTTGTCACCCACATCTCCATCCATCTCAGAAAGTGGCAATGCCAGTTCTTAAGATCGACGCCTGAATgcttgaatgaatgaatgcccTTTTTGTTGTGCGTTACTCTTGCTGACCTGTGCTGAATGTCCAAACAATAATTAGTTAGagacctttatagttaattgtgtgtgtgtcccccaaacacacacatgaatattGATGTTTCTCCTTCCCCACCGTTTGAAGTTGCTTTTATGTAGTTGTTGGTCTCTTACAAAACATCCGAACGCGTGAATGGCACGGGTTATAACTGAACGCAATGAGCGTCGACCCAAAATGACACAACCCACCTTCAGTCCCCGGCAGGCGTCTCCTCTCCATTTTAAAGTCATACGCGCAGTGCTCAGGTACAATATGATAATAAAACTGTGATCTCTTCAGCTCAGCGTCTCAAGACCTCTGATGAACATGTGCCTTTTGGGAGTCAAGCCTTATTCGTAGGTGATTCAATACTATAGGGAAAAGATTGTAATTAAAGCaaccacaaaaataacacattttggaCACTGGTGATCGAGCGATTCTCTTCTCTATACAGGAAATGTCCTCGGTTCAGTATTCACTTCCCAACTCGCCCTGTAGGAATAGTGAAGCCACTGACCTGCTTTCAGACGAACACACGCGAATCGCCTGTACAGTTAAACCAGGCCAGTCCAGGGAGCTACTCTGGATGGTCGGCTGCCCATTCGCGCTGAACTGGGGCTCCACGTCGGCGATCCTGCGGCCCAGCTGGGCTCGGGCCCGGTCCTCTGCAGCCCCGTTTCCCGCTGCTTGCCTGGTGCGTCTCTCCCTGCGTTGGCCGGCGTCCAGTCATGCTTCATACGCAGCTTCCCAACCCCTTCCACTGTgcgcctctctccctctccgctCAGTGTAACGGCATCCAGAAGCAACGGCTCTGTTCTCCCGGCCAGCTTGTCATTCCTGAGATCCGAAAAGTGCTGCTCGACACATTTTAATtcgtagtagtaataataatgatgatggaTCTGTAGTGTTGGCAGAATGCTCGTAGCCGTGGACAGGAGTGTTGTGTGTCCGTGTTCGGGGGCTGAAGGGCTGAGGTGTCTCCCCAGTGTGTCCTGCATCATTTAGACCCATTTCCCATCCCCAAGAAATCTCATCCCGCTGAGATCCGAACCTCCTTTCAGCTGCTTATGAAATCATTATCTCTGTTGATGCACAGAGGTTTCCCCGTAGGACACACACCCACTTATGTCTGTGCAGGGacagttttttcatttttattacacaacGGCACCTGGGAGTTTCGCTGGCCATTAAtgaatttttgttgttgtttttaattctcaTAACCGCTTTATAAATGCTGGGATTAATCAAGTAATGCTGAGAGTGGAAACGTTCTTAAGGGGaaatctgtgtttctctgtaacCCAGTCTTGTTGTATATCTCAGATTTCACTGTCACTACATGGAAAATACCTGGAAAACACTCCTGttcctcttgtttttttttctctaatggGTGTGAATAAcaaagcagttttctttttaaggatATGATTGCCTCTTCTGTAGATATTGAGCAGCCTCTGTTTCCTCAcagtatgtttatttaatacatttaacataaagGTTGTTTTTAGaccttttaataataacaacgaatgtgtgtgtttcattaaaatgattgtacagttatttgttttgttatcccTTTGCCATAAATAAATTTCTTTTCGTA

Function

GO: NA

KEGG:

id description
K12192 CHMP2B; charged multivesicular body protein 2B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85950 lncRNA downstream 181965 7054777 ~ 7058319 (-) True G68774
TU85949 lncRNA downstream 185978 7053931 ~ 7054306 (-) True G68773
TU85943 lncRNA downstream 194472 7044125 ~ 7045812 (-) True G68767
TU85931 lncRNA downstream 249417 6990603 ~ 6990867 (-) True G68757
TU85891 lncRNA downstream 559996 6680025 ~ 6680288 (-) True G68724
TU86010 lncRNA upstream 33707 7288063 ~ 7288335 (-) True G68826
TU86011 lncRNA upstream 34580 7288936 ~ 7289437 (-) True G68827
TU86013 lncRNA upstream 85995 7340351 ~ 7340555 (-) True G68829
TU86069 lncRNA upstream 147796 7402152 ~ 7411890 (-) True AMCG00014276
TU86070 lncRNA upstream 159373 7413729 ~ 7416515 (-) True AMCG00014278
AMCG00014265 mRNA downstream 146971 7077039 ~ 7093313 (-) True AMCG00014265
AMCG00014262 mRNA downstream 169560 7062062 ~ 7070724 (-) True AMCG00014262
AMCG00014264 mRNA downstream 178306 7061721 ~ 7061978 (-) True AMCG00014264
AMCG00014263 mRNA downstream 197568 7040731 ~ 7042716 (-) True AMCG00014263
AMCG00014258 mRNA downstream 352194 6887026 ~ 6888090 (-) True AMCG00014258
AMCG00014269 mRNA upstream 93096 7347452 ~ 7365740 (-) True AMCG00014269
AMCG00014270 mRNA upstream 113038 7367394 ~ 7376923 (-) True AMCG00014270
AMCG00014271 mRNA upstream 125333 7379689 ~ 7386984 (-) False AMCG00014271
AMCG00014277 mRNA upstream 133262 7387618 ~ 7397769 (-) True AMCG00014277
AMCG00014276 mRNA upstream 147796 7402152 ~ 7411538 (-) False AMCG00014276
TU85055 other downstream 4411140 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 4596377 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 4697587 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 5322102 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 5337669 1900640 ~ 1902615 (-) True G67832
TU86038 other upstream 123732 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 163242 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 882975 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 901873 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 1128929 8383285 ~ 8384224 (-) True G69156

Expression Profile