RNA id: AMCG00014270


Basic Information

Item Value
RNA id AMCG00014270
length 2623
RNA type mRNA
GC content 0.58
exon number 17
gene id AMCG00014270
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7367394 ~ 7376923 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGCTGAGGAAGTGTGTGAACCATCCCTATCTATTTGACGGTGTGGAACCGGAGCCGTTCGAGATGGGGGAGCACCTGGTGGAGGCCAGTGGGAAACTGCACCTCCTGGACAGCATGCTGACCTTCCTGCACCACAAGGGCCACCGGGTGCTGCTGTTCTCCCAGATGACACGCATGCTGGACATCCTGCAGGACTACATGGAGTACCGAGGCTACAGCTACGAGCGGCTGGACGGATCAGTGCGTGGGGAGGAGCGCAACCTCGCCATCAAGAACTTTAGCAGCAAGGACGTGTTCGTGTTCCTGCTGAGCACCAAGGCTGGCGGGGTGGGGATGAACCTGACGGCTGCCGACACCGTGATCTTCGTGATCCGGCTGCTGGCGCGGGACACGGTGGAGGAGGTGGTGTACCGGCGCGCTGCCTCCAAACTGCTGCTGACCAGCACGGTGATCGAGGGCGGGCACTTCTCCCTGCTGGACCAGGCGGACTCCGGCACGGCGGGACTGCAGCTCCACGAGATCCTGAAGTTTGGCGTGGACAAACTGCTGTCCTCGGAGGAGAGCTCGGTGCAGGACGTGGACCTGGGACTGATCCTGGGACAGACGCAGGGGGGCGAGTGGGTGATGGATCAGGAGCCCCCCGTCTCCAGCGAGGTGGACAGCGAGGACGACGGCGAGGGGAAGACCCACATGTATCTGTACGAGGGCAGGGATTACTCCCGGGACACCAGCGCAGAGGATCAGAGAAGCTTTGAGAAGCTGCGGGAGCTGCATGCCACCCTGCAGGGGGCGCTGGGGGCAAAGGGGCGATCTCTGCGCAACAAGCCCAGCGTCTCCCTGTCCGGCCCCCTGGAGACCGTGCTGCGCAGGAAGAGGGAGCTGAGTGAGACGGAGCTGGAGCTCAGGAGGCAGAGGAGGCAGGAGGCGGCGGCCAAGAGGGCCAAACTGAGAGCGGACCGGGAACgtcagcagcaggagcagcagctgaAGAAGAAGATGGCGTGGTGGGAGTCCTGTGGGTACCGCTCTCGGTGCGTCCCCTCGGAGGACAgcgatgaggaggaggaggaggaggacggcAGCCTGTCCTCCACGGACTCGGAGTGCACGGACATCCGCTACGTGCTGGGGGACGTCACCCACCCCCAGGCGGCCCGGGAGGATGCCATCATCGTACACTGCGTGGatGACTCAGGGCACTGGGGCCGCGGCGGGCTCTTCACGGCGTTGGAGGTGCGGTCAGACCAGCCCCGCAGGCAGTACGAGCTGGCCGGCGAGATGAAAGACCTGGATCTGGGACATGTGCTGCTCTTCCCTATCGACGATAAGGAGTCCAGGCTGGATGGGCAGGACCTGCTGGCCCTGGTCGTGGCTCAGAAAAGAGACCGATCCAACAACCTGTCCGGCATCAAGCTCTCGTCCCTGGAGGACGGCCTGAGGAAGATCTACAGAGTGGCCAAGAAGAAGAGAGccagTGTCCACCTCCCGCGTCTTGGTCACGCCACTAAGGGCTTTAACTGGTACGGTACAGAGAGGCTGATCCGCAAGCACCTGGCCTCCCGGGGAATTCCCACCTACATATATTACTTCTCCAGGAATGCGGCCCCGGCGAAGCCCCCAGCCTCCAGCGGCGCCGGGGTGAGGAGCGTGGTCGGAGCGGACGAGGCCGGGCCCAGCTCGGTCCCTGACCTGGACGACTTCATGAGCGGAGTCCATGTGTTCTTCTACAACATCGCCGCGTCGGACAGGAAGAGACTGGCCCGCTTCCTCCCCGGCACCTACGACGGCAACGAGGCCGACCAGCTGGGCGCGGATGTCACGCATGTGGTGGCCGAGGTGGAGAGCCCCGTTCACGCGCAGGAGCTGGAGGCCCTCCTGGCGCAGCACCCCCGGGCGCTGGCTGTGAAGACGAGCTGGCTGGAGGCCTGCTTCTCCCAGCAGAAGAAGGTCGGCACGGCTCCGTACCAGATCGGCGCGGACTGACGTAACCGGCCCGGGTCTCCTCTTGTTCGGGCCCAGGAGATCTGGATCAAatggagttttatttttgttgttatcggctcttttgtgtgtgactaggatgtatttatattaacatactGAATACAAACATACCTTTTTACAGAGTGCACATATacttataattgtattttacagtaaaacgTGTGAATTATTTAGAAACTAGATTCCAGATCTGTAGTCCAAtcagttattttgtattcataagGTCTTCCTAGGCAGTTTTCTAATGGGATTTTTCCATGAATTAAACTTTCCTGTGTTGCATAAGTTCCTGTATTCTGCTTTCAAAATGCTCTGGCTCGGATGTTTCCGTGACCCTCCCCTGGCCACACAGCGCTCTACTGTGCAGTTACCGGCActtgacactgacacacagagggCTGTGTTGTTGCTCATTGTTTACACATCTGTAATGTACCCATTTTCTCTTATTTAGCTCATGTGTGGAGACATTGAATGACTGAAAAACCTGTTCATGTGGGCAAtagcaaaataatatatacatgtcatttaaaaagaaaaacctcgATCTGTTACCTTTAAGCTGTTTTGTCAGAgttgcatattttaataaacgATACTGATCTTCTAGAACAAA

Function

GO:

id name namespace
GO:0006338 chromatin remodeling biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K20092 CHD1L; chromodomain-helicase-DNA-binding protein 1-like

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86013 lncRNA downstream 26839 7340351 ~ 7340555 (-) True G68829
TU86011 lncRNA downstream 77957 7288936 ~ 7289437 (-) True G68827
TU86010 lncRNA downstream 79059 7288063 ~ 7288335 (-) True G68826
TU85950 lncRNA downstream 309075 7054777 ~ 7058319 (-) True G68774
TU85949 lncRNA downstream 313088 7053931 ~ 7054306 (-) True G68773
TU86069 lncRNA upstream 25229 7402152 ~ 7411890 (-) True AMCG00014276
TU86070 lncRNA upstream 36806 7413729 ~ 7416515 (-) True AMCG00014278
TU86077 lncRNA upstream 63577 7440500 ~ 7441172 (-) True G68867
TU86086 lncRNA upstream 79055 7455978 ~ 7459889 (-) True G68874
TU86087 lncRNA upstream 88486 7465409 ~ 7465662 (-) True G68875
AMCG00014269 mRNA downstream 1654 7347452 ~ 7365740 (-) True AMCG00014269
AMCG00014268 mRNA downstream 113038 7240284 ~ 7254356 (-) True AMCG00014268
AMCG00014265 mRNA downstream 274081 7077039 ~ 7093313 (-) True AMCG00014265
AMCG00014262 mRNA downstream 296670 7062062 ~ 7070724 (-) True AMCG00014262
AMCG00014264 mRNA downstream 305416 7061721 ~ 7061978 (-) True AMCG00014264
AMCG00014271 mRNA upstream 2766 7379689 ~ 7386984 (-) False AMCG00014271
AMCG00014277 mRNA upstream 10695 7387618 ~ 7397769 (-) True AMCG00014277
AMCG00014276 mRNA upstream 25229 7402152 ~ 7411538 (-) False AMCG00014276
AMCG00014278 mRNA upstream 37110 7414033 ~ 7421714 (-) False AMCG00014278
AMCG00014279 mRNA upstream 48205 7425128 ~ 7425676 (-) True AMCG00014279
TU85055 other downstream 4538250 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 4723487 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 4824697 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 5449212 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 5464779 1900640 ~ 1902615 (-) True G67832
TU86038 other upstream 1165 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 40675 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 760408 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 779306 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 1006362 8383285 ~ 8384224 (-) True G69156

Expression Profile