RNA id: TU86038


Basic Information

Item Value
RNA id TU86038
length 814
RNA type TUCP
GC content 0.56
exon number 5
gene id AMCG00014271
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7378088 ~ 7386984 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAGAATTAGGCGAGTGGCAGTAATTGGGTGCATTGTTCCTTTACATTGAGAAAACTGGGGCTTGTGGAAAGGGACAGTCAGTGGATGCAGATTTTAAAGCACTGCTTCCAACTTCTGCAGACTTTATGATTTTGTGCTGAAGCATGTTGTGCACTTTGGCTGTTTTGTATGTTTCCCTATTTCTAATGAACCTGCTATGTGCCTAAGCTGTAAAGTTTCAAGAAGAATCACATACCTGACCCCTCTCGAAGGTCAAACGGCCCACCCATAGTCACCCAGTGCAGCACCCAGTCTGCTGCAACGCAATGCCAGAGCAGGGCATGAGAAAGTGTCAACCCTACCCACAGGGATCAAGCTGAGGTCCTACCAGCTGGATGGCGTGAGGTGGCTGACCCAGTGCCTGCAGAACCAAGAGGGCTGCATCCTGGGGGACGAGATGGGCCTGGGGAAGACCTGCCAGACCATCTCCCTGCTGGTGTACATGTGTGGGGCGCTGCGGCAGGACGGGCCCTTCCTGGTGCTGAGCCCACTGTCCGTGCTGAACAACTGGAGTGAGGAGCTGCAGAGGTTTGCCCCCGGGCTGTCGGTGGTGTGTTTCTCTGGGGATAAGGAGGCGAGAGCTGAGCTGCAGAAAGATCTCAGGAGCAACAAGCGCTTCCACGTCCTGCTCACGACCTACGAGctcTGTCTCAAAGATGCCTCCTTCCTGAAAAGGTGGCAGTGGCGCGTGCTGGTGGTGGACGAGGCGCACAGGCTGAAGAACCCCAACTCCCTACTGCACAGGACTCTCTCAAGGGTGAGCTCCCCGCCCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86013 lncRNA downstream 37533 7340351 ~ 7340555 (-) True G68829
TU86011 lncRNA downstream 88651 7288936 ~ 7289437 (-) True G68827
TU86010 lncRNA downstream 89753 7288063 ~ 7288335 (-) True G68826
TU85950 lncRNA downstream 319769 7054777 ~ 7058319 (-) True G68774
TU85949 lncRNA downstream 323782 7053931 ~ 7054306 (-) True G68773
TU86069 lncRNA upstream 21372 7402152 ~ 7411890 (-) True AMCG00014276
TU86070 lncRNA upstream 32949 7413729 ~ 7416515 (-) True AMCG00014278
TU86077 lncRNA upstream 59720 7440500 ~ 7441172 (-) True G68867
TU86086 lncRNA upstream 75198 7455978 ~ 7459889 (-) True G68874
TU86087 lncRNA upstream 84629 7465409 ~ 7465662 (-) True G68875
AMCG00014270 mRNA downstream 1165 7367394 ~ 7376923 (-) True AMCG00014270
AMCG00014269 mRNA downstream 12348 7347452 ~ 7365740 (-) True AMCG00014269
AMCG00014268 mRNA downstream 123732 7240284 ~ 7254356 (-) True AMCG00014268
AMCG00014265 mRNA downstream 284775 7077039 ~ 7093313 (-) True AMCG00014265
AMCG00014262 mRNA downstream 307364 7062062 ~ 7070724 (-) True AMCG00014262
AMCG00014277 mRNA upstream 6838 7387618 ~ 7397769 (-) True AMCG00014277
AMCG00014276 mRNA upstream 21372 7402152 ~ 7411538 (-) False AMCG00014276
AMCG00014278 mRNA upstream 33253 7414033 ~ 7421714 (-) False AMCG00014278
AMCG00014279 mRNA upstream 44348 7425128 ~ 7425676 (-) True AMCG00014279
AMCG00014275 mRNA upstream 45441 7426221 ~ 7436106 (-) True AMCG00014275
TU85055 other downstream 4548944 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 4734181 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 4835391 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 5459906 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 5475473 1900640 ~ 1902615 (-) True G67832
TU86071 other upstream 36818 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 756551 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 775449 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 1002505 8383285 ~ 8384224 (-) True G69156
TU86630 other upstream 1929671 9310451 ~ 9317167 (-) True AMCG00014328

Expression Profile