RNA id: AMCG00014272


Basic Information

Item Value
RNA id AMCG00014272
length 4106
RNA type mRNA
GC content 0.57
exon number 18
gene id AMCG00014272
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7464503 ~ 7482560 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTACCTGCAGCAAAGTGCCCTCTGTCCTGCCCTGCGCTCTTTGCTGCAGCTTTTGGCAACCCAGGGGGAGGGGGCCAGTGCAGTGCGTGTGCAAACTGAGTTGGGCTTTTGCACCACTTCACTGAGTATTGATCTGCTGCTGCTTGGGGGGAGAGGCCATGTGCAGTGTGGGGGCACTCAGGAGTGTGAGGCGCAGTTAGGGACATTATCACTGGAAAACACTCTCTACACTGATACCACTTACCCTCTATACACTGAAATCGAGACCAGACCAGTCTCACCCCCcgaaacacacactcacagccgGCTGGCCCCACCTTACCTTCCATATCTGGGCCCTCTGCTGGGCAGGCAGCTCCCGGCCCTGGATAATGTTCCTCACCGTCTCCAGGTCACAACCTCCCGAGTCCAGAGCCTCCGCCAGCTCCCGATTGCACTAAACGTGGCCGGGAAGGGGGATAGCCTGGCTTCCTGGGACGGCTCTCTGGACCTGCCCGAGCAGAGCCTCATTCACAGCCGGTGCCAGCAGCTGCTCGACCAGCTGTCCGTGCCGGAGGAGAGCCGGGACGCCGCCCTGGCCGACACCGAGGCGGTCATCACCTTCTACTGCAAGTCGCGCAACATCACCTTCACCCCTGACCTCAACTGGCCGCACCTCCTGCGGCCCCTGCTCGGCCTGCAGCTCCCCCGCAGCGACCTGTACAACTGCTTCTACGCCATCATGAACAAGTACATCCCCAGggacTGTGTGCCCAAGGGCCGGCCCTTCCACCTGTacaggctgctgctgcagtACCACGAGCCCGAGCTTTGCTCCTTCCTGGACACCAAGAAGATCACTCCTGACTCCTATGCCATCAGCTGGCTGGGCAGCCTTTTCTCCAGCCACTGCCCCCCCGAGGTCACGCAGGCCATGTGGGACGTCTACCTGCAGCAGGCCGACCCCTTCCTCATTTTCTTCCTGATGCTCATCATCCTCGTCAATGCCAAAGATGGCATTCTGGCTCAGGAAGGAGACGGTAAAGAAGAAATCGTCAAGATGCTCGAGAGCTCCCCGGCCTACCTGGAGTGCGAGGACCTCGAGGACCTGTTCTCCCTGGCGCACTATTACTACAGCAAGACCCCGCTGTCCCTCAGGAAGGAGAACCAGAACCTGTTTGGCAGCAGCCTGGTGGCcctgaaggaggaggagatggaccTGAGCCAGGCGCTGTGTCTGCCCGTGTCCGTGCCCGAGATCCTGCAGGCCAACCAGCTGCAGGCGGAGGGCGTTCGCTTCTTCGTGGTGGACTGCCGGCCAGCGGAGCAGTACAATGCCGGACACCTGTCCACCGCCTTCCACCTGGACTCGGACCTGGTGAGTGCCCTGTGTCCGGCGCTGTCTCTCAGGGCTGAaggtgtccctgtgtgtctgtgtcccccGGGGTCCCAgcccttgtgtgtctgtgtccctcgGTGTCTGAGCCCTGTGTTCGTGCCGCAGATGCTGCAGAACCCCTCCGAGTTCGCGCTGTCAGTGAAGTCCCTGCTGGAGGCGCAGAAGCAGTCCCTGGAGTCCGGCTCTGTGGCCAGCGGGGAGCACCTGTGCTTCATGGGCAGCGGGCGCGAAGAGGAGGACATGTACATGAACATGGTGCTCGCGCACTTCCTgcagAAAAACAAGGAATATGTGAGCATCGCCAAAGGAGGGTTCATGGCTCTGCAGCAGCACCTGGCTGACATCAACGTGGAGGGGCCGGACAATGTGTACGTGCACTGGATCGTCAGCACCTCGGGGCCCCGCGGCAGCATCGGCTCCGCAGACGAGAAGGTGATCAGCTTCATTGAGAACACCTCCACACCTGTGGACAGACTGTCGTTCACTCTGCCCTGGCCCGAGAAGGAGACCCCCGAGAGGCACGTGAGCAGCAGTGACCGGGTGGGGAAGCCTTACCGCGGGGTGAAGCCGGTGTTCAGCATCGGAGATGAGGAGGAGTACGACACGGACGAGATCGACAGCTCGTCCATGTCCGACGACGACCGCAAGGAGGTGGTGAACATCCAGACCTGGATCAATAAGCCGGACATCAAGCACCACGTGCCCTGCAGCGAGGTCAAGGAGACGGGCCACATGTTCCCCAGTCATCTCCTGGTGACAGCCACGCACATGTACTGCCTGCGGGAGATCGCGTCTCGGAAGGGCTTCGCCTACATCCAATCCCGGCAGGCGCTGAACTCCGTGGTGAAGATCACGTCCAAGAAGAAGCACCCCGAGCTCATCACCTTCAAGTTCGGCAACAGCAGCTCCTCAGGGGTGGAGATCCTGGCCGTGGAGAGATACTTGATACCAAATGCCGGCGACGCCACCAAAGCCATCAAGCAGCAGATCATGAAAGTGCTGGACGCCCTGGAGAGCTGATGACCGGGAGGTGGAGGACGGGGGGCGCTCCCCGAGGGACGGCGAAGTGGCTGGGCGTGGCCCGCAGCGCTGCTCTCTGCCCTCCCCGCCGCGGAGTGGGGGGGCAGATATACACAGCAGAGAGCGGCCACTGTGGGGACGGAGACGCGTTGTTGTCTGTTCcactttttattcttttcctcttcgttttttttttttgtaaatacttaaaaaaagatgcagtaTGTTATTACAGGCCCGTTTAATCTTTTGTTTTGGCGTTTGCCTCTAGCCTTAATGAGAGCAGCTGTGAGAGGCGTGGACTGTGCGCCAGAAGGGTGTTATCTGAGAGACACTGCGGCTCATAGGACCAGTCACCAGAAACTGACTACGGTGTTATTACTCATTGGAAACATCCAGCGCTTGCCTGCACCAAAtggtttgatttttctttattacGGTTCTTTTCGCCGGACGGGCGTTTCAGAGCACAGGCTGCCCCCCTGGCTCGCATTCTCAGTTGCTTTATGTTGGGATCCCTCCAGGGCTGGACTCCATGCTGTCGGCAGCTTTGCCTGGAGGAGCTCCAGCCTGGTGGAGGATGCTGCGTCTCTCTTCCTCGTATCGATTCTCTTTGGCGTAGAAACGGAtgattgagagagggagaggatctGAGTTCGGTGTTTGCCTGATGGCTGCGGTTCAGTCTGGCTACTGTGTACATAACATTTATGTCTGttgtttccccccctccccccaaggTCAATGTCCTCGTTAAAAATCTCTATTTTGATATCCGCCCCATAATATTTTCAGCTTGTAGCCTTAACCTTGAAACGCTGTGGGTGTCGGTGACTACAAATACTTCCTGTAAATATCGTATGCTTGTGTTGTTACCCCAtaaggcccagagctggagtaTGTGGGACCTGAAGGGTATGAGTGCAGGTTTTGCTGGTGTCCCATCAGttttgagagagggagagagatggcaGGCAGACGCAGTAAGAGGTGTTTTACTCTACTGCCAGGGTCTGCCCCCTCCCTGTGACtctgtgtggtcagtgtgtctgtctgaggaATCTGTGGGGTCTCGGTCTGATTGGGAACGAACTCGGCTGTCCTGTCCCGTCTGGGAGGTCACGGCACGGGGGCCCATAGGCACGGAGGACAGGGTCATGTAAGGCGGTTTAccttctgtctctcttcctctcgAACTCTACTGttacacgcacacgcatgcacgctctctctctcgggaCGGGAACActactttgtgtgtttgtgcacgATTGTGAGGCGGTACGTCAACACAGCCATATGTGACAACAAATAGCCACAGGGCAGCCTGGAGGACGAgtgccccctctctctcgctctctgatGTTCACTAATCCAGTAGCGAAGATGTTGAGCCTCTAAGAAATCCAGAGCTCTACAGTGTTGCCCTGGCTGCCCCATCCGCCCCCACCCCTCCGCTCTGCAGACTATAGGGGGTCTTCAAACTTCAGCTCCTATGCAAACGAAAAGGAAACAACCACTTGGGGTGAGAGGGGTGAGGTGTGCAGGGGCTGTAGTGCCACACGGGGAAATCCTCTGGAACATGTCTTTTGAATTGACCTCATTAATATGCTTCAGCTTTTCTAATTCTGTAAAGAGATAAAAATACCTGAATTATTTGTAGTAATAACAGTTGTTTTGTGTTAACTGCaccttatgtttttttt

Function

GO:      GO:0005097,GO:0032851

KEGG:

id description
K22555 TBC1D23; TBC1 domain family member 23

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85947 lncRNA upstream 406184 7056707 ~ 7058319 (+) True G68771
TU85912 lncRNA upstream 720392 6743863 ~ 6744111 (+) True G68738
TU85895 lncRNA upstream 749682 6713171 ~ 6714821 (+) True G68728
TU85863 lncRNA upstream 1217454 6244902 ~ 6247049 (+) True G68698
TU85846 lncRNA upstream 1257927 6204178 ~ 6206576 (+) True G68686
TU86116 lncRNA downstream 143428 7625988 ~ 7626404 (+) True G68904
TU86203 lncRNA downstream 391967 7874527 ~ 7874742 (+) True G68982
TU86229 lncRNA downstream 532184 8014744 ~ 8015003 (+) True G69006
TU86247 lncRNA downstream 650728 8133288 ~ 8136210 (+) True G69023
TU86463 lncRNA downstream 1251763 8734323 ~ 8735939 (+) True G69206
AMCG00014273 mRNA upstream 8547 7445016 ~ 7455956 (+) True AMCG00014273
AMCG00014266 mRNA upstream 179268 7278122 ~ 7285235 (+) True AMCG00014266
AMCG00014267 mRNA upstream 226941 7229073 ~ 7237562 (+) True AMCG00014267
AMCG00014261 mRNA upstream 390901 7073324 ~ 7073602 (+) True AMCG00014261
AMCG00014260 mRNA upstream 409596 7050336 ~ 7054907 (+) True AMCG00014260
AMCG00014274 mRNA downstream 1502 7484062 ~ 7489351 (+) True AMCG00014274
AMCG00014281 mRNA downstream 155261 7637821 ~ 7642535 (+) True AMCG00014281
AMCG00014282 mRNA downstream 162858 7645418 ~ 7653546 (+) True AMCG00014282
AMCG00014283 mRNA downstream 176908 7659468 ~ 7664529 (+) True AMCG00014283
AMCG00014285 mRNA downstream 230829 7713389 ~ 7729891 (+) True AMCG00014285
TU86046 other upstream 47909 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 115036 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 2812539 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 2812539 4649200 ~ 4651964 (+) False G68475
TU84898 other upstream 4754174 2709024 ~ 2710329 (+) True AMCG00014146
TU86705 other downstream 2520498 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 6854298 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 8193071 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 8193071 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 8646965 16129525 ~ 16132802 (+) False AMCG00014508

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00063917 True 3273 mRNA 0.44 18 NC_007117.7 28914233 ~ 28943056 (-)