RNA id: AMCG00014273


Basic Information

Item Value
RNA id AMCG00014273
length 1800
RNA type mRNA
GC content 0.61
exon number 12
gene id AMCG00014273
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7445016 ~ 7455956 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCACAAACAGGAAGTCCCAAGCGCGACTGACCCGGATGCGGTTGCTGCACCGCCACTAGTGTCCCATGATGCACCCGGCTCCTCCCTGACCTCGCCGTGTCTGTGTCGGCAGTGCAGTTGCGTGCTCGTCGGTTGTTGCTTGTTAGATGATGGCGGCCTCAAAGCCTGTGGAGCCGCAGACCGGCGGCGGGCTACCCCGCTGGCAGCTCGCCCTCCTGGTGGGCACCCCCCTGGTGTTGGGGGCCGGCGCCGTGTACCTGTGGAACCGCAGCCGGAGGAAGGAGAACCAAGGCAAGCGCAACGGCGAGAGGAAAACCCCCGAAGGCAGCGCTAGCCCCGTCCCGGGCCAGCCGCAGCAGGACGGCGCCGCGAACCGAGCCGGCCGAGAGCAGGAGGAAATGagtCCTCTGGACCGGGCCCAGGGAGCCAAGAACAAGGGCAACAAGTACTTCAAGGCTGGCAAGTATGAGCAGGCCATCCATTGCTACACCGAGGCCATCGGCCTGTGTCCCAAAGAGCAGAAGGGAGACCTGTCCACCTTCTACCAGAACCGAGCCGCGGCCTACGAGCAGCAGatgAAGTGGGCCGAGGTGGTGCAGGATTGCTCCCGGGCCGTGGAGCTGAACCCGCGCTACGTCAAGGCCCTGTTCCGCCGGGCCAAGGCCCAGGAGAGGCTGGACAACAAGAAGGAGTGTCTGGAAGATGTGACAGCGGTGTGCATTCTAGAAGCCTTCCAGAACCAGCAGAGCATGCTGCTGGCAGACAAGGTGCTCAAGCTGCTGGGCAAGGAGAAGGCAAAGGAGAAATACAAGAACCGTGAGCCCCTAATGCCGTCGCCACAGTTCATCAAGTCCTACTTCAGCTCCTTCACGGACGACATCATCTCACAGCCGCTGCAGAAGGGTGAGAAGAAGGACGAGGACAAGGACAAGGAGGGGGAGGCCGCTGAGGTCACTGAGAGCTCCGGGTACCTGAAGGCCAAGCAGTACATGGAGGAGGAGAACTACGACAAGATCATCAGCGAGTGCAGCAAGGAACTGCGGGCGAATGCTCTGATCAAGCGGGGCAGTATGTacatgcagcagcagcagccccagctGTCCACACAGGACTTCAACCTGGCAGCTGAGATCGACCCACACAATGCCGACGTCTACCACCACCGCGGACAGCTGAAGATCCTGCTGGACCAGGTGGAGGAGGCGGTGGGCGACTTTGACGAGTGTATCCGGCTGCGTCCCGACTCCGCGCTGGCCCAGGCCCAGAAGTGCTTTGCCCTGTACCGACAGGCCTACACCGGGAACAACCCCTCCCAGGTGCAGACCGCCATGTCTGGCTTCGAGGACGTCATCCGCCGATTCCCCAAGTGCGCTGAGGGCTACGCTCTGTACGCACAGGCTCTGACAGACCAGCAGCAGTTTGGGAAGGCTGATGAAATGTACGACAAGTGCATTGACCTGGAGCCGGACAATGCTACCACATACGTACACAAAGGGCTGCTACAGCTGCAGTGGAAGCAGGACCTGGACAAAGGCCTGGAGCTCATCAGCAAGGCCATCGAGATCGACAACAAGTGCGACTTCGCCTACGAGACCATGGGCACCATCGAGGTGCAGAGGGGTAACCTGGACAAGGCCATCGACATGTTCAACAAGGCCATCAACCTGGCCAAGTCGGAGATGGAGATGGCCCACCTGTACTCCCTGTGCGACGCCGCTTACGCCCAGACGGAGGTGGCCAAGAAATACGGGCTGAAGCCCCCGacactgtaacccctccccacCCACCCTCCAACCAC

Function

GO: NA

KEGG:

id description
K17768 TOM70; mitochondrial import receptor subunit TOM70

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85947 lncRNA upstream 386697 7056707 ~ 7058319 (+) True G68771
TU85912 lncRNA upstream 700905 6743863 ~ 6744111 (+) True G68738
TU85895 lncRNA upstream 730195 6713171 ~ 6714821 (+) True G68728
TU85863 lncRNA upstream 1197967 6244902 ~ 6247049 (+) True G68698
TU85846 lncRNA upstream 1238440 6204178 ~ 6206576 (+) True G68686
TU86061 lncRNA downstream 13122 7469078 ~ 7469310 (+) False AMCG00014272
TU86116 lncRNA downstream 170032 7625988 ~ 7626404 (+) True G68904
TU86203 lncRNA downstream 418571 7874527 ~ 7874742 (+) True G68982
TU86229 lncRNA downstream 558788 8014744 ~ 8015003 (+) True G69006
TU86247 lncRNA downstream 677332 8133288 ~ 8136210 (+) True G69023
AMCG00014266 mRNA upstream 159781 7278122 ~ 7285235 (+) True AMCG00014266
AMCG00014267 mRNA upstream 207454 7229073 ~ 7237562 (+) True AMCG00014267
AMCG00014261 mRNA upstream 371414 7073324 ~ 7073602 (+) True AMCG00014261
AMCG00014260 mRNA upstream 390109 7050336 ~ 7054907 (+) True AMCG00014260
AMCG00014259 mRNA upstream 398141 7039754 ~ 7046875 (+) True AMCG00014259
AMCG00014272 mRNA downstream 8547 7464503 ~ 7482560 (+) True AMCG00014272
AMCG00014274 mRNA downstream 28106 7484062 ~ 7489351 (+) True AMCG00014274
AMCG00014281 mRNA downstream 181865 7637821 ~ 7642535 (+) True AMCG00014281
AMCG00014282 mRNA downstream 189462 7645418 ~ 7653546 (+) True AMCG00014282
AMCG00014283 mRNA downstream 203512 7659468 ~ 7664529 (+) True AMCG00014283
TU86046 other upstream 28422 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 95549 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 2793052 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 2793052 4649200 ~ 4651964 (+) False G68475
TU84896 other upstream 4734687 2706840 ~ 2710329 (+) False AMCG00014146
TU86705 other downstream 2547102 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 6880902 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 8219675 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 8219675 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 8673569 16129525 ~ 16132802 (+) False AMCG00014508

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00063918 True 1981 mRNA 0.47 12 NC_007117.7 28946041 ~ 28961660 (-)
grasscarp (Ctenopharyngodon idella) CI01000340_03342324_03363204.mRNA True 2901 mRNA 0.47 17 CI01000340 3342301 ~ 3363619 (-)