RNA id: AMCG00014274


Basic Information

Item Value
RNA id AMCG00014274
length 1907
RNA type mRNA
GC content 0.57
exon number 10
gene id AMCG00014274
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7484062 ~ 7489351 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCTCCCCGGGCAGCAGCAGCCGCACGGCCGTCTGCACCTCCCGGGACGTGACGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGGCGGCCAGCCGCTCGAAGATGTCGTTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCCGGGTGCACCTGCTTCAGCACCTTGTAGATGTAGATGGCGTAGCTCTCCTTCCTGCGTCCCTTCCGCCCCTTTCCGCCCGTCTTCGCTATCTTGGTGACGGCTTTTTTGGAGCCTTTCTTTGGCACTGGCAGCTTGGCAGGGTCGGGCATTGTTCACatcaaaagtcaaaataaaaccaatatggATCTCTGCTTCCCTTGCGCGATGAGCCCAGGGAGGCGACACTGGCGGTGCGTCGCCTGCTGAAACTGatgcctatttatttatatcgGTATGCAAATGATGGGTTGATGGAATCCGAGGAAGCCTTCTGATTGGCGGGTTGTGCTGTACAGTAGCCAATGAGAGTGATTTGAGTCTTTCTGGCGGATTGTACGAAACTTTCACAGCGGACCTGATGGAGAGCGACTGACCGAAGTCAGCGCTCTaacacacatgcataataattcTTCTTCTTGTGTCCTGAGAGACACCGTCCAGtgcagcagggtctccagccctggtcctgcaggagCACACCACTCTCCCATATTTGTGGGCGGTTGAGAATAAAACTACATGACCCAGAAGGCTTTGCGACCGAATATCATATACTTCCGGCAGAGGCTTGGACGTTCAGTGTCTGCTGTGTCGGGGTATGTCTGCGTTAGGAAAAGCAATGACGAAGTTCCGGCTGGCCCTGGTGCAGCTGCATGTGTCCGCTGTGAAGACGGACAACCTGCGCCGCGCCCGCGCCCTGGTGAAGGAGGCCGCAGGGCAGGGGGCAAAGGTCGTCACGCTGCCGGAGTGCTTCAACTCCCCGTATGGCACGAGCTTCTTCCCCGAGTACGCCGAGCGAATCCCCGGAGAGTCCAGCCAGCTGCTGTCAGAGGCGGCAAAGGAGAGCGGAGTGTACCTGATAGGAGgctCCATCCCTGAGGAGGACGGGGGGAAGCTGTACAATACCTGCCCTGTGTTCGGCCCCGACGGCTCCCTGCTACTCAAACACAGGAAGATCCACCTGTTTGACATCGATGTTCCTGGGAAAATTCGCTTCCAGGAGTCGGAGACGCTCAGCCCAGGAAGCAGCTTCTCTGTGTTCGACACGCCCTTCTGCAAGATCGGCGTGGGGATCTGCTATGACCTGCGCTTCGCAGAGCTGGCCCAGATCTACACCAGGAGCGGCTGCCAGCTGCTGGTGTACCCTGGGGCTTTCAACATGACCACTGGCCCGGCCCACtgggagctgctgcagaggggGAGagCGGTGGATAACCAGGTGTTCGTGGCCACAGCCTCTCCGGCCCGGGATGAGACGGCCTCCTACACTGCCTGGGGTCACAGCACCGTGGTCAACCCCTGggGGGAGGTGATTGCAACGGCAGATGCAGAGGAGACCATCGTGTATGCTGATATCGACCTGCAGTATCTGGCGGAGGTCCGGCAGCAGATCCCCATCCACAGCCAGCGCCGGCACGACCTGTACAGAGTGAGCGCTGTGCCGGAGGACTAGACCCAGCAGGCCAGGCGCAGAGACCACAGGCCCCAGCTCCACGCGGCCCGACTCTCCGGCCCCGCAGCCCCAACTCTCTGATGGAGAGTTTTTTCTGATGCACTTAatttgagtatttttaaattgtgatattcactgaaaataaatgatattaAATATCTACTAAAGAGtcacacaaaatatgaaatcttCTCACCGATGCTAGATGCACTTATGTAATAAAGCTACAAATGATTGGAAGGAAAA

Function

GO:

id name namespace
GO:0006807 nitrogen compound metabolic process biological_process
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds molecular_function

KEGG:

id description
K13566 NIT2, yafV; omega-amidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86061 lncRNA upstream 14752 7469078 ~ 7469310 (+) False AMCG00014272
TU85947 lncRNA upstream 425743 7056707 ~ 7058319 (+) True G68771
TU85912 lncRNA upstream 739951 6743863 ~ 6744111 (+) True G68738
TU85895 lncRNA upstream 769241 6713171 ~ 6714821 (+) True G68728
TU85863 lncRNA upstream 1237013 6244902 ~ 6247049 (+) True G68698
TU86116 lncRNA downstream 136637 7625988 ~ 7626404 (+) True G68904
TU86203 lncRNA downstream 385176 7874527 ~ 7874742 (+) True G68982
TU86229 lncRNA downstream 525393 8014744 ~ 8015003 (+) True G69006
TU86247 lncRNA downstream 643937 8133288 ~ 8136210 (+) True G69023
TU86463 lncRNA downstream 1244972 8734323 ~ 8735939 (+) True G69206
AMCG00014272 mRNA upstream 1502 7464503 ~ 7482560 (+) True AMCG00014272
AMCG00014273 mRNA upstream 28106 7445016 ~ 7455956 (+) True AMCG00014273
AMCG00014266 mRNA upstream 198827 7278122 ~ 7285235 (+) True AMCG00014266
AMCG00014267 mRNA upstream 246500 7229073 ~ 7237562 (+) True AMCG00014267
AMCG00014261 mRNA upstream 410460 7073324 ~ 7073602 (+) True AMCG00014261
AMCG00014281 mRNA downstream 148470 7637821 ~ 7642535 (+) True AMCG00014281
AMCG00014282 mRNA downstream 156067 7645418 ~ 7653546 (+) True AMCG00014282
AMCG00014283 mRNA downstream 170117 7659468 ~ 7664529 (+) True AMCG00014283
AMCG00014285 mRNA downstream 224038 7713389 ~ 7729891 (+) True AMCG00014285
AMCG00014288 mRNA downstream 294378 7783729 ~ 7795382 (+) True AMCG00014288
TU86046 other upstream 67468 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 134595 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 2832098 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 2832098 4649200 ~ 4651964 (+) False G68475
TU84898 other upstream 4773733 2709024 ~ 2710329 (+) True AMCG00014146
TU86705 other downstream 2513707 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 6847507 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 8186280 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 8186280 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 8640174 16129525 ~ 16132802 (+) False AMCG00014508

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00067197 True 652 mRNA 0.48 1 NC_007118.7 6465468 ~ 6466119 (-)