RNA id: AMCG00014275


Basic Information

Item Value
RNA id AMCG00014275
length 5012
RNA type mRNA
GC content 0.51
exon number 4
gene id AMCG00014275
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7426221 ~ 7436106 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACGGGTGACAGGACTGAGAGCGCCTAACTATAGACGTCCCTGCTTCTGTAAGGTGCTTAATGCTCTTTATAGCTTCTGCACTCTTTCACCCCGCTTCACCCCGTCTTACTCACTCTCTCCGACTGAACCCGTCACTTGTCACTTTACACCCTGCTCCAAATCCTTCCTGTGTTTTCTTGCTCGTTTCCGTGCCTGTTGTTCCCCATATGCTTTGGACCGCAGGGCGAGATAAGGGCTGAGTTTTTAACATCATGCCTTAACCCTTCAGCCGCGGCAAGGCGCTTGTTTTCCTTTCTATTGTTGGGCTCGTCCGTTATTCTTCACTGACATATCAGTCGCACATGTTTACCGATAGAAGAACTGTCCCCCTGTGTGTCCACACTGGaaacacacaacagaaattCAGTGTGGCGTTGCTGTGCACAAGGTCAAGTTACTCCTTAAACCAATTTGTGACAGCCATGTTCAGTTTCACTTTCAATAGAATAATGTGAAGCAAAAAGTtgttgaactgaactgaactgaaaagtTGTTGAACTGTTATTGTCATAGTGGTCActgatttcatatttcatatcatTACATCCACACTGAAATCTTTTTCAAGCAGCGGATCTTGAAATCACATGTGTTGTGAAGAATTTTcctgataataattataattactaaGTGCTAAAGACACCAGCATGAATCAAATCTTTGCCCAAGACACCCAACGCTAATCATGTTATTATGAACAGGTTCCTCAATACATCAAccacaacagcaacacacaaaGAGTTGAGTGTTCAGAGTCAGTGGTCTGCGGTCTTAGGAAAGAATTGGGTCTATTGCCCTTGTTTTCTTCTCAGTATCCAATGTTTATTTCCCATGTGACCTAAGTGTTAATGACCCTGGCGCACGGCTCCTCAGGGGATGATGTAAATTGCTCTCCCAGCTTCACGTGTTGGGGTCGGAGCTACGGCCGGAGGATCTGGATCTGGCCTACTTGAATAGCCCTCAAAGCAGGTTTCATCATCTCTGCTGCCCACGTGGCTGACCTGTTTACACACATAGCACTGCCCACtctcactaacacacacacacacacactcacgcacacacacacaagcaactGCTCCGCCCTGCTCTGTTACCCTTGTTTATTCTCACCAGCTTTTCAATCTGCCTCCTGCCGGGCTTGTCTGTAATCGGCCTCCCCCCGTTCCCTTTCCCTGCTGATTCTCAATCCCTTTCTCACTTTCCAGATCATCCCCCCACCCCTGGCCGCTCTGTGCCCCTTTACAAATTAGCACTGAGTCATTAGGCCAGATCCAGGGGTCCACATGTATTTGTGTAgggtgtgtatttgtgtgttcgGGGATAGGGGAGGCACGGTGTGTAACTTAGAGATAACGGGACATTAGAAAGTTTCCAAATGAGAAGTCCCGTTCCTCTTCCTTGGTCGCTGGCCGTCCACTCTGTTCGTGAAGGAGCTCAAACATATCGAAGTCTCCTTCCACAACATGGCTGGGGAATTCGTTCCAGAATGCCACACTTCTCTGCGTGAAAATAGTCTCTCTGTTGTGAAAGCCAGCGGCACTCAGGAGCTGGTATTTAGGGTGGGGTACCTCTCCTGTAATTACCCTTATTAAAGTCAATCATAGTCATATTATTCTGTATTTACTTAGTAATTAGTCTGCAGGGGAGAAGATAAGCACCAGCAAACAGAAACGATATGTGTGTGCACCTGGTTGCTCAGCAGGGTCGCTCGGCTCTCGGACCGCCTGCAAAGTGTTGGCACACCAGCCACATGTTCATGAAAGAGAAAGGCAATAAAAGAGGAACACGATATCAAAGGCACAGCAATTGATTCTGTCTTCTCGTGTGGAAATCTCTCAGCTGACATTGATTTCCTGAAGGATCACCGGATTGTCGCTGAATTCTGCCGTGGAGTGGAAAAGAGGCAATATAATCGTATTGTATTAAGTGTGTTTTAGAAGGCAAATAAAAAGTGTTCGGCATGTCAGCGAGGGCCTCCACGGGCAGACCCTACTTGGCCCGGTCAACACGCCCATCCCCTGCTGtcctctcttcccctccccaGCTCACAGCGACCCTCTTCGTACAGGCAGAGGACAGAGGGAGGCTCCAGGCCttcgggagagagagagagaaggggacaGAGAGAAAGTAGACATCGCTCCATAGTTATTGACACATTTGATGTGCTCAGCCAGTGGAAAGTATGGGACAGTGTGCTGGGCGCTGACTCCCCTCCAGGCCCTGGCTGACATGGCAAAGCTCTGTAATGGAAAGATTAAAAGCACGCCGGACCCCCACACCCTACCAACAACGGCCCCCAACCCACACgccaccacatacacacacacacacacacacacacacacacacacacacacacagtcaccatctccatctcctctcctccctcctacCCTCCCTGACTCTAAACTGATTACGGAGGATTGGCTTATATAAAGACTTCACCAAAAGCTGTGGAGAGTATTTTTGGTTCAGCTTAGAACTACAAACCACACCAACCGTCAGAGCAAACCACAGGGGGAAGCAACTGCCACAGCGTCAGTCTGAACACAGTGGAGCTACAGTGCAGCAAggagcacagcacagagcagcacagaaaAGTTGCAGTGTAGAAAGTTGCAATACAACAGCCTAGTGCAGCACATAAAGgttacaaaaaacagaaaagaccaGTTCAGAAAAATCTCAGCGCGGTTAACATAGGCGCAGCAGTCTGAGTGTCTCTTGTGTCTCTCTGCGTGGTCGTGTCTGGCGTCCCGGACGTCTCTCTTCCTGCGGGAGCGCGCCTTGTCCACCACAAAGCTGTTTCCCACAATCTGCATGGACCACGAAGAGGACGACGATGTTAACTTTGCCAAGTGGATGAGCAGCTTCTGGGGCCACAGCGTGAGCGAGGAGCCGGCACGCGAACGCAGGGCCAGCTGGAGACGCCCTGCCCGGCCCATCTCCGACCGCAGAGCCTCCCTGCCCTGCCCGGCCCAGCTCAACGCCATGCACCTGCGCCGCCTGCATGCTGCCAGCACGGCGCCCTCGTCCGCGTACTCGCAGTGCCGGGAGGACAAAGAGCCGCAGACGCACCAGAAGGCCCGGCGCGCCTCCTCCTCCGACGACAACCGGCGCAAGTCCTCCGGGCCCGACGCGCACTTCCTGCCCATCCACGAGCTGGCCGAGTCCTTTGAACGTCGCCTGTGCTTCCGCGGCCGCCACACCGTGTCTCTGGGCAGCACGGATGACGTCTGTGTGATCTGTCACGATGAGCTGCGCGGCAGAGGCGTCAGGGAGCTGCACTGCACCCACCGCTTCCACAAGGAGGTAGCATCCCCTGAGCACCCGCACAGAGCCGCCCGGGCCCCCCACCGGGCCCCGCGCCCCGCAGCCCCGCCTGTGTCCCCGCTGTGCCTCCCTGCTGCCTCTGCCTGCTCCTCCCCCACACCCCTGAGTCTGCTGCCAGCTTCCCCAGCCCTCTCCACAAGCTCCTCTAGTCACACACGTGCAtgcgcacacacatgcataatcCACCGAGGGGCGAGAATGAGGATCAGCAGCCGCCCGTCCGGAAGGGCTCCCTCCGCCGCCAGCGCTGAGCCCGGAGCGCACCCCACCATCCCCCATCGCCCTCTGAGCCCCCCGGCCACCCCCGCACTTCTACACCTCCTGCCACCccaacacacagagacacagaggaatGGGAAGAACACCGCAGAGCCACGCTAAAGCAAAAGAATCGGACAGTCCAACCATGGCTCCCGGAGGCAGGATGCAGTGGTTATGCCTCCCCTGGCAGGACAGCATCCCACAGCACGAGTCTCGTCTGGATCGCAGTGCCAGCTCGAGGACAGCAGTGCATTTGGCTCCAGTGCAAAGATGGcacactctttctctcttcttccATGGCCAGTGAGGAAGAGAACCCCTTCAGACCTGAGTCTTCATCCTCCAGCCCTTATTGCGTCTCAGTTCTCACCGCCCCTGTGCTTCCATCACTGGACACACCCACTTCTGTGTCACCACACGGTGAAGTACTGGAAATGCATCCGCCATGCGTTCACGCTACTGTGTGAGGAAGTGAATTCTCACGATGGACACAACCGCCCCGAAACATCTTTCTTGCCAAAACGACCAGGGGCCACTGCTCCTGTGTACATAACCCTAGATCTGGGATGGGTTACTATGAGCAATGACCCATTGTGCCTTGATCCTTAAAAACAATCTGGCCTACAAGTCTAGTTGTTTGGAGAAGTTGATTCACGCAAGGGTGGAGATTTCCTTTAATAAGTAAATAGCAGCTTTGTGTGAGCAGTGCttaaattgtctttttaattgtaCTCTTTTGCATGTGTTACCAAGACCTGGTGAGAGGAAACGCTCCCCACTGGAATCAATCAGGCAGCTTTTGACTTAgtaacacaaagcacaaatacaaatatgtggaTTCCATTGATTTTGACCTTTAGCACATCTGTCTACCGTctcacaacaacaaacagcacaATTTAAGCACTGTGTGTTACTCTTCTTGCTGCATAAGACATCAAATGTTTGCAGGACAGAGATTTTTGCAGTGATTTGTTTCATGGGTTTAAAGAGTAAACGCCTCATAATTCTACTTGAACAATTAGGCTATAGAGTGAAAACCATCAGCACACGACTGGCATCATATTATTCTGACAGCATCAACGGCAGTTCTGTGCTTTGGCTTTGGTCTGACATAAAAGTCGAATTGTGCCACACAAATGTCCACAGCTGAAAGTACGCTGTCACTGCAAACACTTCCTTGTCCACCGTGCTGGTTATTTTCCCTGTGCTGCTCAGTGTGGCCTTGTGTTTAGATGTGTTTCTTGCTTATTAGTGAACTGTAGATACCGTGCCTGTAACtcagagtgtgtctgtgtggaaacGCTGTGACTGCAGTGTACTATAATGTCAACACTGGAAGATAATAAATATCTCATTCTGTGAACAGAAA

Function

GO:

id name namespace
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86070 lncRNA downstream 9706 7413729 ~ 7416515 (-) True AMCG00014278
TU86069 lncRNA downstream 14331 7402152 ~ 7411890 (-) True AMCG00014276
TU86013 lncRNA downstream 85666 7340351 ~ 7340555 (-) True G68829
TU86011 lncRNA downstream 136784 7288936 ~ 7289437 (-) True G68827
TU86010 lncRNA downstream 137886 7288063 ~ 7288335 (-) True G68826
TU86077 lncRNA upstream 4394 7440500 ~ 7441172 (-) True G68867
TU86086 lncRNA upstream 19872 7455978 ~ 7459889 (-) True G68874
TU86087 lncRNA upstream 29303 7465409 ~ 7465662 (-) True G68875
TU86117 lncRNA upstream 189879 7625985 ~ 7626375 (-) True G68905
TU86202 lncRNA upstream 438047 7874153 ~ 7874358 (-) True G68981
AMCG00014279 mRNA downstream 545 7425128 ~ 7425676 (-) True AMCG00014279
AMCG00014278 mRNA downstream 4507 7414033 ~ 7421714 (-) False AMCG00014278
AMCG00014276 mRNA downstream 14683 7402152 ~ 7411538 (-) False AMCG00014276
AMCG00014277 mRNA downstream 28452 7387618 ~ 7397769 (-) True AMCG00014277
AMCG00014271 mRNA downstream 39237 7379689 ~ 7386984 (-) False AMCG00014271
AMCG00014280 mRNA upstream 133205 7569311 ~ 7580100 (-) True AMCG00014280
AMCG00014284 mRNA upstream 232447 7668553 ~ 7675258 (-) True AMCG00014284
AMCG00014287 mRNA upstream 294908 7731014 ~ 7751865 (-) True AMCG00014287
AMCG00014286 mRNA upstream 316800 7752906 ~ 7783002 (-) True AMCG00014286
AMCG00014291 mRNA upstream 584879 8020985 ~ 8060018 (-) True AMCG00014291
TU86071 other downstream 2930 7417598 ~ 7423291 (-) False AMCG00014278
TU86038 other downstream 45441 7378088 ~ 7380780 (-) True AMCG00014271
TU85055 other downstream 4597077 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 4782314 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 4883524 2540317 ~ 2542697 (-) False AMCG00014134
TU86293 other upstream 701225 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 720123 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 947179 8383285 ~ 8384224 (-) True G69156
TU86630 other upstream 1874345 9310451 ~ 9317167 (-) True AMCG00014328
TU86854 other upstream 3360610 10796716 ~ 10798147 (-) True G69537

Expression Profile