RNA id: TU86069


Basic Information

Item Value
RNA id TU86069
length 2392
lncRNA type sense_over
GC content 0.49
exon number 7
gene id AMCG00014276
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7402152 ~ 7411890 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAAGGCTGTTCAAATGTGAAAACGACACAACAGGGAAGCGAAGCAAGCCCTCGCAGGTGTACGATCCTTTCCACTGTCTTTTTCTCTGCCAGGATCTTGTACGGACTGAGCTGATGAACTGGTTTTCTTTGATTATAACCAAACCTATGCAAATTTAGTAGAGAAATAAGGTTAAAACTTCAAAAGAAccaacacacatatatatttgtattctataACAAGGAGTGACTCTTAAAAACTTTGCGTAGGGGACTCTTGTTTCCCTGTGTTACCCTGTGTTTGTGAGCTGGTGTGGTCTGCAGGGATGGTGTGGTTTGGCGCTGAGCGCCCGTGTCTTTCTCTCCTGACGCGCAGGCTGCAAATGAAGCCTCCACCCTGGGCTGGGGCACCCGAGTGAAGGGCTTCTGCATCTGCTTCGGGCTGGGGGTGCTGTGCTCGATCCTGGGGACGTGCTTGCTGTGGGTCCCCCGGGTGGGAATCATTCTGTTTGCTGTCCTGTACACCTTCGGGAACATCGCCTCCCTCTTCAGCACCATGTTTCTGATGGGCCCTCTGAAGCAGCTGAAGCGGATGTGTGAGCTGACCCGGGCACTGGCCACTGCAGTCATGCTGGTGTGCTTTGCTCTGACACTCTGCGCTGCATTCTGGTGGAAGAACAAGGGCCTGGCGCTGCTCTTCTGTGTTATGCAGTTCTTGGCTTTTGCCTGGTACAGTATATCCTACATACCGTTTGCCAGAGACGCGATAATAAAGATGTTCTCCATGTGCCTGAAGTGAAGCCCCTCGCGGTCTGCGGCCCGGTGCCCAGCGCCAGGGCCCGAGGCCGAGCCGGCCCACCCGCTCCAGTCACTCCAAACCCTCTCCCTGCTTTTAGGATGGTAAAGCACCTACTCAGATACCTGGCAGGTAGAACCAgcggggggggagaaaaaaacaacaaaaaaatcagttcCAATAATACTACAGGTGCCACTTAATTTGGAGCATCCTTGACCTTTTTCGGCACAACAATTTCAATCCATTCCCACCACTCTGCGGTCTTGAATGCCTtccaaaaacataaaagcacaaACAGGCTGCTGTGTCTCTGGGAGGTGGGCGGCCCGGCGGCGCCTCTGCTGCCAGTCCTCTCGGCGAGCAGGGTTCGGGTTTGGGGGGGTTTTGTCACGGTGCGGCttcgtgtctctctctctctctctcactcggtCCTGAACTCTCCTTCCTGCTGTCCTGAATGTAGACCACAGAGTTCTAGTGACTGTGCCTTCCTACTGTATGCTCCCGGCGTTTCACGGGAGCCGGGGGCGTCACGGTCTCACTCACTGTGGGGTGAACTGTGACACTCTTGTCCTTAATTTATGCCTTAATGCTGCTGGGGGCGGTGGACTCCGCAGCGCGTAGTCGGGGGGTCTTAGCTGGCAGGTGTATTTGTGTTATGGTCTTATGCGAGGGTGAGGAAGGCTGCTCTCGGGGGTGGATTGGGCGGGGACGTGGGTGAGCTCGCTGGGTGTTGACGAAGTTCGGGAAAGGTTTTGGTTTGTGGTTCCTGTGACTAGTGTTCCTCCCTCAGTTTGCCTTTTCAAAGTTCCCTCTTCTGATCGCCTTGGATCGTTcggctcctctctctctgaccaGAGCAACTTTGCACAGCATTCAAAGTGCTCCTACATTTTGGTAGATGAGTCAcgatgtttgttttcttttcttgagaAACTGTTTtaagttgttattttgttgctaacttaatttttaaaacctAAAGTATAGGAagtttactttttatatatacagctctggaaaaaattgagaccactccaagttcagagatcaatgttaagtggtctcttcattttttccagcgctgtataggtgtgtgtgtaaacatacatacatacttccATTAAGTGATAGTGTAATTCTGATTGTCACTGTCTTAACCTTTGatatgtcttttctttttttgttcgacctttaatatacatttagatATTGCTGAAGATGTCTGTCTTTTAAGCTGGTTGTGTCTGCAGTCCACTTGTGAGACGACAGCGCTGATAGTCAGACTGGGAAACATTGCCGCAGCTCTTAGCAATAGGACACTTAATACACCAGCTATAAACGACTGATTTATCCTAGATTGTgtagagaaaaagaaaacgcaTTCCAGTGAACTGTGTATCTGCCTGCAGTTTGCCTTCAGCCTGGCTCCCCCAcgcctctgtgtgtctgtgagccTCGTGTCTGCCTTAACTTTGAACATACTTTGAAATGAGCAAAAATCATCCAAAAGTGTCCTTGTTTCTGCACTTGTTTAGCTACGGGATATTGTCATGATGATGtcaatgttatgtttttaatatgtccAATAAACTGCATATGTATATACCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86013 lncRNA downstream 61597 7340351 ~ 7340555 (-) True G68829
TU86011 lncRNA downstream 112715 7288936 ~ 7289437 (-) True G68827
TU86010 lncRNA downstream 113817 7288063 ~ 7288335 (-) True G68826
TU85950 lncRNA downstream 343833 7054777 ~ 7058319 (-) True G68774
TU85949 lncRNA downstream 347846 7053931 ~ 7054306 (-) True G68773
TU86070 lncRNA upstream 1839 7413729 ~ 7416515 (-) True AMCG00014278
TU86077 lncRNA upstream 28610 7440500 ~ 7441172 (-) True G68867
TU86086 lncRNA upstream 44088 7455978 ~ 7459889 (-) True G68874
TU86087 lncRNA upstream 53519 7465409 ~ 7465662 (-) True G68875
TU86117 lncRNA upstream 214095 7625985 ~ 7626375 (-) True G68905
AMCG00014277 mRNA downstream 4383 7387618 ~ 7397769 (-) True AMCG00014277
AMCG00014271 mRNA downstream 15168 7379689 ~ 7386984 (-) False AMCG00014271
AMCG00014270 mRNA downstream 25229 7367394 ~ 7376923 (-) True AMCG00014270
AMCG00014269 mRNA downstream 36412 7347452 ~ 7365740 (-) True AMCG00014269
AMCG00014268 mRNA downstream 147796 7240284 ~ 7254356 (-) True AMCG00014268
AMCG00014278 mRNA upstream 2143 7414033 ~ 7421714 (-) False AMCG00014278
AMCG00014279 mRNA upstream 13238 7425128 ~ 7425676 (-) True AMCG00014279
AMCG00014275 mRNA upstream 14331 7426221 ~ 7436106 (-) True AMCG00014275
AMCG00014280 mRNA upstream 157421 7569311 ~ 7580100 (-) True AMCG00014280
AMCG00014284 mRNA upstream 256663 7668553 ~ 7675258 (-) True AMCG00014284
TU86038 other downstream 21372 7378088 ~ 7380780 (-) True AMCG00014271
TU85055 other downstream 4573008 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 4758245 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 4859455 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 5483970 1916727 ~ 1918182 (-) True G67843
TU86071 other upstream 5708 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 725441 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 744339 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 971395 8383285 ~ 8384224 (-) True G69156
TU86630 other upstream 1898561 9310451 ~ 9317167 (-) True AMCG00014328

Expression Profile