RNA id: AMCG00014277


Basic Information

Item Value
RNA id AMCG00014277
length 813
RNA type mRNA
GC content 0.63
exon number 6
gene id AMCG00014277
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7387618 ~ 7397769 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGGTCGAGGGCAGTAGCGACGCTGTTGGCCGCAGTGCCCCCAGTAGCCAGTGCTGCATCTCCCGGCTGCTCAGCGTGGTGGACAGCGAGCTGCAGGCCGGCCGGGAGAAGGGCGACCCCACGGAGAAGCAGCTCAAGGTGACGCTGGAGGAGGCAGAGCTGTGGAAGAAATTCAAGGAGGTCACCAACGAGATGATCGTCACCAAGAGTGGCAGGAGGATGTTTCCGGTGCTGAAGGTCAGTGTGTCGGGCCTGGACCCCAACGCCATGTACTCCTTCCTGCTGGACTTCGCCCCGGCCGATGCCCATCGCTGGAAGTACGTGAACGGGGAGTGGGTTCCTGCTGGCAAGCCGGAGACGCACAGCCACAGCTGCATCATGCTGAATTCTCTGCACAAGTACGAGCCCCAGATCCACATCGTGCGCGTGGGCGGCAGCCACAGGATGGTCACCAACCTCTCCTTCGCAGACACACAGTTCATCGCCGTCACAGCCTACCAGAACGAGGAGATCACAGCTCTGAAGATCAAGTACAACCCCTTTGCCAAAGCGTTCCTGGATGCCAAGGAGAGTAACTATCAGTATGGCGGGGGTCTGCCCCTGGCCCCGCCCCATCCTCATGGCTACGAGCGCTACCCCCCCCTGCGCAGTCACCGCAGTGCCCCCTACCCTCCCGCCTATCTCCACCGCAGCCACGGCTCAGCCAGGCTGGGGCCCTGCAGGGAAGcggaggagcaggaggaagaggaggaggaagaggaggaagaggaggaggaggtcgTCCCGGCCCCACGGAGCATCTGTCCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86013 lncRNA downstream 47063 7340351 ~ 7340555 (-) True G68829
TU86011 lncRNA downstream 98181 7288936 ~ 7289437 (-) True G68827
TU86010 lncRNA downstream 99283 7288063 ~ 7288335 (-) True G68826
TU85950 lncRNA downstream 329299 7054777 ~ 7058319 (-) True G68774
TU85949 lncRNA downstream 333312 7053931 ~ 7054306 (-) True G68773
TU86069 lncRNA upstream 4383 7402152 ~ 7411890 (-) True AMCG00014276
TU86070 lncRNA upstream 15960 7413729 ~ 7416515 (-) True AMCG00014278
TU86077 lncRNA upstream 42731 7440500 ~ 7441172 (-) True G68867
TU86086 lncRNA upstream 58209 7455978 ~ 7459889 (-) True G68874
TU86087 lncRNA upstream 67640 7465409 ~ 7465662 (-) True G68875
AMCG00014271 mRNA downstream 634 7379689 ~ 7386984 (-) False AMCG00014271
AMCG00014270 mRNA downstream 10695 7367394 ~ 7376923 (-) True AMCG00014270
AMCG00014269 mRNA downstream 21878 7347452 ~ 7365740 (-) True AMCG00014269
AMCG00014268 mRNA downstream 133262 7240284 ~ 7254356 (-) True AMCG00014268
AMCG00014265 mRNA downstream 294305 7077039 ~ 7093313 (-) True AMCG00014265
AMCG00014276 mRNA upstream 4383 7402152 ~ 7411538 (-) False AMCG00014276
AMCG00014278 mRNA upstream 16264 7414033 ~ 7421714 (-) False AMCG00014278
AMCG00014279 mRNA upstream 27359 7425128 ~ 7425676 (-) True AMCG00014279
AMCG00014275 mRNA upstream 28452 7426221 ~ 7436106 (-) True AMCG00014275
AMCG00014280 mRNA upstream 171542 7569311 ~ 7580100 (-) True AMCG00014280
TU86038 other downstream 6838 7378088 ~ 7380780 (-) True AMCG00014271
TU85055 other downstream 4558474 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 4743711 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 4844921 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 5469436 1916727 ~ 1918182 (-) True G67843
TU86071 other upstream 19829 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 739562 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 758460 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 985516 8383285 ~ 8384224 (-) True G69156
TU86630 other upstream 1912682 9310451 ~ 9317167 (-) True AMCG00014328

Expression Profile